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Aliases for C20orf187 Gene

Quality Score for this RNA gene is

3

Aliases for C20orf187 Gene

  • Chromosome 20 Open Reading Frame 187 2 3
  • Putative Uncharacterized Protein C20orf187 3
  • DJ727I10.1 3
  • HCG2045828 3

External Ids for C20orf187 Gene

Previous GeneCards Identifiers for C20orf187 Gene

  • GC20P010996
  • GC20M010956
  • GC20P011003
  • GC20P010956
  • GC20U900199
  • GC20P011008

Summaries for C20orf187 Gene

GeneCards Summary for C20orf187 Gene

C20orf187 (Chromosome 20 Open Reading Frame 187) is an RNA Gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf187 Gene

Genomics for C20orf187 Gene

Genomic Location for C20orf187 Gene

Chromosome:
20
Start:
10,862,085 bp from pter
End:
11,029,529 bp from pter
Size:
167,445 bases
Orientation:
Plus strand

Genomic View for C20orf187 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for C20orf187 Gene

No data available for Regulatory Elements for C20orf187 Gene

Proteins for C20orf187 Gene

  • Protein details for C20orf187 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UGB4-CT187_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf187
    Protein Accession:
    Q9UGB4

    Protein attributes for C20orf187 Gene

    Size:
    50 amino acids
    Molecular mass:
    5874 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf187 Gene

Proteomics data for C20orf187 Gene at MOPED

Post-translational modifications for C20orf187 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C20orf187 Gene

Domains & Families for C20orf187 Gene

Protein Domains for C20orf187 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf187: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf187 Gene

Function for C20orf187 Gene

Phenotypes for C20orf187 Gene

GenomeRNAi human phenotypes for C20orf187:
genes like me logo Genes that share phenotypes with C20orf187: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf187 Gene

Localization for C20orf187 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C20orf187 Gene

Pathways & Interactions for C20orf187 Gene

SuperPathways for C20orf187 Gene

No Data Available

Interacting Proteins for C20orf187 Gene

Gene Ontology (GO) - Biological Process for C20orf187 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf187 Gene

Drugs & Compounds for C20orf187 Gene

No Compound Related Data Available

Transcripts for C20orf187 Gene

mRNA/cDNA for C20orf187 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf187 Gene

No ASD Table

Relevant External Links for C20orf187 Gene

GeneLoc Exon Structure for
C20orf187
ECgene alternative splicing isoforms for
C20orf187

Expression for C20orf187 Gene

mRNA expression in normal human tissues for C20orf187 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf187 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with C20orf187: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C20orf187 Gene

Orthologs for C20orf187 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf187 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf187 36
  • 92 (a)
OneToOne
Species with no ortholog for C20orf187:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf187 Gene

ENSEMBL:
Gene Tree for C20orf187 (if available)
TreeFam:
Gene Tree for C20orf187 (if available)

Paralogs for C20orf187 Gene

No data available for Paralogs for C20orf187 Gene

Variants for C20orf187 Gene

Sequence variations from dbSNP and Humsavar for C20orf187 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs416059 -- 10,968,822(-) TACCA(C/T)GGAAT intron-variant
rs733522 -- 11,025,772(-) CATCA(A/G)ACGAT intron-variant
rs733523 -- 11,025,790(-) GCCAC(C/T)CAGCT intron-variant
rs733524 -- 11,025,983(-) CAACC(C/T)CCTGA intron-variant
rs748989 -- 10,951,771(-) AGCCT(A/G)TACAC intron-variant

Variation tolerance for C20orf187 Gene

Gene Damage Index Score: 0.11; 2.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C20orf187 Gene

HapMap Linkage Disequilibrium report
C20orf187

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C20orf187 Gene

Disorders for C20orf187 Gene

genes like me logo Genes that share disorders with C20orf187: view

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C20orf187 Gene

Publications for C20orf187 Gene

  1. Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. (PMID: 25342443) LindstrAPm S. … Tamimi R.M. (Nat Commun 2014) 67
  2. Genome-wide association study identifies multiple loci associated with bladder cancer risk. (PMID: 24163127) Figueroa J.D. … Rothman N. (Hum. Mol. Genet. 2014) 67
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 67
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 67

Products for C20orf187 Gene

Sources for C20orf187 Gene

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