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Aliases for C20orf173 Gene

Aliases for C20orf173 Gene

  • Chromosome 20 Open Reading Frame 173 2 3
  • Uncharacterized Protein C20orf173 3
  • DJ477O4.4 3

External Ids for C20orf173 Gene

Previous GeneCards Identifiers for C20orf173 Gene

  • GC20M033873
  • GC20M033833
  • GC20M034783
  • GC20M034830
  • GC20M033578
  • GC20M034109
  • GC20M030886

Summaries for C20orf173 Gene

GeneCards Summary for C20orf173 Gene

C20orf173 (Chromosome 20 Open Reading Frame 173) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf173 Gene

Genomics for C20orf173 Gene

Regulatory Elements for C20orf173 Gene

Genomic Location for C20orf173 Gene

Start:
35,520,741 bp from pter
End:
35,529,656 bp from pter
Size:
8,916 bases
Orientation:
Minus strand

Genomic View for C20orf173 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf173 Gene

Proteins for C20orf173 Gene

  • Protein details for C20orf173 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LM9-CT173_HUMAN
    Recommended name:
    Uncharacterized protein C20orf173
    Protein Accession:
    Q96LM9
    Secondary Accessions:
    • A6PVJ1
    • Q2M293
    • Q5JWS4
    • Q9H449

    Protein attributes for C20orf173 Gene

    Size:
    149 amino acids
    Molecular mass:
    16552 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf173 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf173 Gene

Proteomics data for C20orf173 Gene at MOPED

Post-translational modifications for C20orf173 Gene

No Post-translational modifications

Other Protein References for C20orf173 Gene

No data available for DME Specific Peptides for C20orf173 Gene

Domains for C20orf173 Gene

Protein Domains for C20orf173 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf173: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf173 Gene

Function for C20orf173 Gene

Phenotypes for C20orf173 Gene

genes like me logo Genes that share phenotypes with C20orf173: view

Animal Model Products

CRISPR Products

miRNA for C20orf173 Gene

miRTarBase miRNAs that target C20orf173

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf173

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf173 Gene

Localization for C20orf173 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf173 Gene COMPARTMENTS Subcellular localization image for C20orf173 gene
Compartment Confidence
extracellular 3
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf173 Gene

Pathways for C20orf173 Gene

SuperPathways for C20orf173 Gene

No Data Available

Interacting Proteins for C20orf173 Gene

Gene Ontology (GO) - Biological Process for C20orf173 Gene

None

No data available for Pathways by source for C20orf173 Gene

Transcripts for C20orf173 Gene

mRNA/cDNA for C20orf173 Gene

(6) Selected AceView cDNA sequences:
(4) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf173 Gene

Chromosome 20 open reading frame 173:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf173

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C20orf173
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf173 Gene

No ASD Table

Relevant External Links for C20orf173 Gene

GeneLoc Exon Structure for
C20orf173
ECgene alternative splicing isoforms for
C20orf173

Expression for C20orf173 Gene

mRNA expression in normal human tissues for C20orf173 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf173 Gene

This gene is overexpressed in Testis (52.1).

SOURCE GeneReport for Unigene cluster for C20orf173 Gene Hs.158680

genes like me logo Genes that share expressions with C20orf173: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C20orf173 Gene

Orthologs for C20orf173 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C20orf173 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf173 36
  • 97 (a)
OneToOne
LOC745624 35
  • 98.51 (n)
  • 96.53 (a)
cow
(Bos Taurus)
Mammalia C20orf173 36
  • 30 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC610148 35
  • 76.47 (n)
  • 58.82 (a)
mouse
(Mus musculus)
Mammalia 6430550D23Rik 35
  • 67.49 (n)
  • 52.17 (a)
6430550D23Rik 16
6430550D23Rik 36
  • 38 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102550306 35
  • 66.28 (n)
  • 48.54 (a)
Species with no ortholog for C20orf173:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf173 Gene

ENSEMBL:
Gene Tree for C20orf173 (if available)
TreeFam:
Gene Tree for C20orf173 (if available)

Paralogs for C20orf173 Gene

No data available for Paralogs for C20orf173 Gene

Variants for C20orf173 Gene

Sequence variations from dbSNP and Humsavar for C20orf173 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs224393 -- 35,520,432(+) cgcca(C/T)gccta downstream-variant-500B
rs224394 -- 35,520,775(+) ATACA(A/C/G/T)CATAA nc-transcript-variant
rs224395 -- 35,521,599(+) TCCTT(A/G)GGAAG intron-variant
rs224396 -- 35,524,033(+) ttgtg(G/T)ttttt intron-variant
rs224397 -- 35,524,728(+) aattt(C/T)gctct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf173 Gene

Variant ID Type Subtype PubMed ID
nsv3364 CNV Insertion 18451855

Relevant External Links for C20orf173 Gene

HapMap Linkage Disequilibrium report
C20orf173

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf173 Gene

Disorders for C20orf173 Gene

No disorders were found for C20orf173 Gene.

No data available for UniProtKB/Swiss-Prot for C20orf173 Gene

Publications for C20orf173 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C20orf173 Gene

Sources for C20orf173 Gene

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