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Aliases for C20orf166-AS1 Gene

Subcategory (RNA class) for C20orf166-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C20orf166-AS1 Gene

  • C20orf166 Antisense RNA 1 2 3 4 5
  • NCRNA00335 3 4
  • C20orf200 3 4
  • C20orf166 Antisense RNA 1 (Non-Protein Coding) 2
  • Chromosome 20 Open Reading Frame 200 2
  • C20orf166 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 335 2

External Ids for C20orf166-AS1 Gene

Previous HGNC Symbols for C20orf166-AS1 Gene

  • C20orf200
  • NCRNA00335

Previous GeneCards Identifiers for C20orf166-AS1 Gene

  • GC20M061142

Summaries for C20orf166-AS1 Gene

GeneCards Summary for C20orf166-AS1 Gene

C20orf166-AS1 (C20orf166 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf166-AS1 Gene

Genomics for C20orf166-AS1 Gene

Regulatory Elements for C20orf166-AS1 Gene

Enhancers for C20orf166-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F062589 1.3 FANTOM5 Ensembl ENCODE 17.3 -38.6 -38617 1.8 GTF2F1 TBP MXI1 TAF1 MAX SIN3A RAD21 POLR2A SMC3 RCOR1 MIR1-1HG C20orf166-AS1 ENSG00000229882 ENSG00000232121 MIR133A2 MIR1-1 ENSG00000264490 WI2-87327B8.2
GH20F062549 1.2 Ensembl ENCODE 14.3 -7.2 -7150 19.2 ELF3 RARA SLC30A9 GLIS2 ZNF366 HSF1 SCRT2 FOS CREM ZNF263 MIR1-1HG C20orf166-AS1 ENSG00000229882 ENSG00000232121 MIR4758 ENSG00000223669 ENSG00000264490 LAMA5 MIR1-1 GC20P062789
GH20F062738 1.6 FANTOM5 Ensembl ENCODE 10.5 -189.0 -189004 5.1 PKNOX1 ATF1 SIN3A GLIS2 ELK1 FOS JUNB MIER2 REST SMARCB1 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR133A2 MIR1-1HG C20orf166-AS1 MIR1-1 ENSG00000229882
GH20F062649 1.5 FANTOM5 ENCODE 10.5 -100.5 -100531 4.7 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 OGFR OGFR-AS1 MIR1-1 C20orf166-AS1 MIR1-1HG MIR133A2 DIDO1 OSBPL2 DPH3P1 BHLHE23
GH20F062641 1.3 Ensembl ENCODE 11 -93.8 -93821 8.0 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 SLCO4A1-AS1 OGFR OGFR-AS1 C20orf166-AS1 MIR1-1 MIR1-1HG MIR133A2 TCFL5 NKAIN4 ENSG00000167046
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C20orf166-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C20orf166-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001021581 61 601 GLIS2 PATZ1 GLIS1 ZBTB8A ZIC2 ZBTB20 EZH2
ENSR00001839126 861 601 CTCF ZNF366 GLIS1 ZBTB8A ZIC2 ZZZ3 ZBTB26 EZH2

Genomic Location for C20orf166-AS1 Gene

Chromosome:
20
Start:
62,543,070 bp from pter
End:
62,551,561 bp from pter
Size:
8,492 bases
Orientation:
Minus strand

Genomic View for C20orf166-AS1 Gene

Genes around C20orf166-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf166-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf166-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf166-AS1 Gene

Proteins for C20orf166-AS1 Gene

  • Protein details for C20orf166-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NR2-C2AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf166-AS1
    Protein Accession:
    Q96NR2
    Secondary Accessions:
    • Q52LN1

    Protein attributes for C20orf166-AS1 Gene

    Size:
    134 amino acids
    Molecular mass:
    14382 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf166-AS1 Gene

Protein Expression for C20orf166-AS1 Gene

Post-translational modifications for C20orf166-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C20orf166-AS1 Gene

Domains & Families for C20orf166-AS1 Gene

Protein Domains for C20orf166-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf166-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

Function for C20orf166-AS1 Gene

Phenotypes for C20orf166-AS1 Gene

genes like me logo Genes that share phenotypes with C20orf166-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf166-AS1 Gene

Localization for C20orf166-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C20orf166-AS1 Gene

Pathways & Interactions for C20orf166-AS1 Gene

SuperPathways for C20orf166-AS1 Gene

No Data Available

Interacting Proteins for C20orf166-AS1 Gene

Gene Ontology (GO) - Biological Process for C20orf166-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf166-AS1 Gene

Transcripts for C20orf166-AS1 Gene

mRNA/cDNA for C20orf166-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf166-AS1 Gene

C20orf166 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf166-AS1 Gene

No ASD Table

Relevant External Links for C20orf166-AS1 Gene

GeneLoc Exon Structure for
C20orf166-AS1
ECgene alternative splicing isoforms for
C20orf166-AS1

Expression for C20orf166-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C20orf166-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf166-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (x7.2), Heart - Atrial Appendage (x5.8), Heart - Left Ventricle (x4.5), and Esophagus - Gastroesophageal Junction (x4.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C20orf166-AS1 Gene



SOURCE GeneReport for Unigene cluster for C20orf166-AS1 Gene:

Hs.337024
genes like me logo Genes that share expression patterns with C20orf166-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C20orf166-AS1 Gene

Orthologs for C20orf166-AS1 Gene

Evolution for C20orf166-AS1 Gene

ENSEMBL:
Gene Tree for C20orf166-AS1 (if available)
TreeFam:
Gene Tree for C20orf166-AS1 (if available)

No data available for Orthologs for C20orf166-AS1 Gene

Paralogs for C20orf166-AS1 Gene

No data available for Paralogs for C20orf166-AS1 Gene

Variants for C20orf166-AS1 Gene

Sequence variations from dbSNP and Humsavar for C20orf166-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111350644 -- 62,545,621(+) GTCCC(C/T)GCCCC intron-variant
rs111651569 -- 62,546,612(+) CGTGC(A/G/T)CGAGG nc-transcript-variant
rs112016644 -- 62,544,761(+) GGAGC(A/C)GGCTT nc-transcript-variant
rs112546694 -- 62,550,620(+) TTCTC(C/T)ACCTT intron-variant, utr-variant-5-prime
rs112644930 -- 62,549,352(+) ACAAG(G/T)GGATG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C20orf166-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953302 CNV deletion 24416366
nsv586501 CNV gain 21841781
nsv586496 CNV gain 21841781
nsv470556 CNV loss 18288195
nsv459068 CNV gain 19166990
nsv459065 CNV gain 19166990
nsv1072554 CNV deletion 25765185
esv2422398 CNV duplication 17116639
dgv4344n100 CNV gain 25217958
dgv4343n100 CNV gain 25217958

Relevant External Links for C20orf166-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf166-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C20orf166-AS1 Gene

Disorders for C20orf166-AS1 Gene

Relevant External Links for C20orf166-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf166-AS1

No disorders were found for C20orf166-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf166-AS1 Gene

Publications for C20orf166-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C20orf166-AS1 Gene

Sources for C20orf166-AS1 Gene

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