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Aliases for C20orf166-AS1 Gene

Subcategory (RNA class) for C20orf166-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for C20orf166-AS1 Gene

  • C20orf166 Antisense RNA 1 2 3 4
  • NCRNA00335 3 4
  • C20orf200 3 4
  • C20orf166 Antisense RNA 1 (Non-Protein Coding) 2
  • Chromosome 20 Open Reading Frame 200 2
  • C20orf166 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 335 2

External Ids for C20orf166-AS1 Gene

Previous Symbols for C20orf166-AS1 Gene

  • C20orf200
  • NCRNA00335

Summaries for C20orf166-AS1 Gene

GeneCards Summary for C20orf166-AS1 Gene

C20orf166-AS1 (C20orf166 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf166-AS1 Gene

Genomics for C20orf166-AS1 Gene

Genomic Location for C20orf166-AS1 Gene

Start:
62,543,070 bp from pter
End:
62,551,561 bp from pter
Size:
8,492 bases
Orientation:
Minus strand

Genomic View for C20orf166-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf166-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf166-AS1 Gene

No data available for Regulatory Elements for C20orf166-AS1 Gene

Proteins for C20orf166-AS1 Gene

  • Protein details for C20orf166-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NR2-C2AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf166-AS1
    Protein Accession:
    Q96NR2
    Secondary Accessions:
    • Q52LN1

    Protein attributes for C20orf166-AS1 Gene

    Size:
    134 amino acids
    Molecular mass:
    14382 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf166-AS1 Gene

Proteomics data for C20orf166-AS1 Gene at MOPED

Protein Expression for C20orf166-AS1 Gene

Post-translational modifications for C20orf166-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C20orf166-AS1 Gene

Domains for C20orf166-AS1 Gene

Gene Families for C20orf166-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for C20orf166-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with C20orf166-AS1: view

No data available for UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

Function for C20orf166-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C20orf166-AS1 Gene

Localization for C20orf166-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for C20orf166-AS1 Gene

Pathways for C20orf166-AS1 Gene

SuperPathways for C20orf166-AS1 Gene

No Data Available

Interacting Proteins for C20orf166-AS1 Gene

Gene Ontology (GO) - Biological Process for C20orf166-AS1 Gene

None

No data available for Pathways by source for C20orf166-AS1 Gene

Transcripts for C20orf166-AS1 Gene

mRNA/cDNA for C20orf166-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf166-AS1 Gene

C20orf166 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf166-AS1 Gene

No ASD Table

Relevant External Links for C20orf166-AS1 Gene

GeneLoc Exon Structure for
C20orf166-AS1
ECgene alternative splicing isoforms for
C20orf166-AS1

Expression for C20orf166-AS1 Gene

mRNA expression in normal human tissues for C20orf166-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf166-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (7.2), Heart - Atrial Appendage (5.8), Heart - Left Ventricle (4.5), and Esophagus - Gastroesophageal Junction (4.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C20orf166-AS1 Gene

SOURCE GeneReport for Unigene cluster for C20orf166-AS1 Gene Hs.337024

genes like me logo Genes that share expressions with C20orf166-AS1: view

Orthologs for C20orf166-AS1 Gene

Evolution for C20orf166-AS1 Gene

ENSEMBL:
Gene Tree for C20orf166-AS1 (if available)
TreeFam:
Gene Tree for C20orf166-AS1 (if available)

No data available for Orthologs for C20orf166-AS1 Gene

Paralogs for C20orf166-AS1 Gene

No data available for Paralogs for C20orf166-AS1 Gene

Variants for C20orf166-AS1 Gene

Sequence variations from dbSNP and Humsavar for C20orf166-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs3934573 -- 62,546,738(+) TGCGT(G/T)GGGCA nc-transcript-variant
rs3934574 -- 62,546,280(+) CCGAA(C/T)CCACG nc-transcript-variant
rs6062240 -- 62,545,081(-) CACCC(C/T)TGACC intron-variant
rs6062277 -- 62,548,390(-) GGGGC(C/T)CTATG nc-transcript-variant
rs6062278 -- 62,547,734(-) TGGAT(C/T)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf166-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv913047 CNV Loss 21882294
esv2422398 CNV Duplication 17116639
nsv470556 CNV Loss 18288195
dgv4603n71 CNV Loss 21882294
nsv459065 CNV Gain 19166990
nsv913073 CNV Loss 21882294
dgv4608n71 CNV Loss 21882294
dgv4610n71 CNV Loss 21882294
nsv459068 CNV Gain 19166990
essv22589 CNV CNV 17122850
nsv913101 CNV Loss 21882294

Relevant External Links for C20orf166-AS1 Gene

HapMap Linkage Disequilibrium report
C20orf166-AS1

Disorders for C20orf166-AS1 Gene

No disorders were found for C20orf166-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

Publications for C20orf166-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C20orf166-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf166-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf166-AS1
    • Block miRNA regulation of C20orf166-AS1 using miScript Target Protectors

    Sources for C20orf166-AS1 Gene

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