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Aliases for C20orf166-AS1 Gene

Subcategory (RNA class) for C20orf166-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for C20orf166-AS1 Gene

  • C20orf166 Antisense RNA 1 2 3 4
  • NCRNA00335 3 4
  • C20orf200 3 4
  • C20orf166 Antisense RNA 1 (Non-Protein Coding) 2
  • Chromosome 20 Open Reading Frame 200 2
  • C20orf166 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 335 2

External Ids for C20orf166-AS1 Gene

Previous HGNC Symbols for C20orf166-AS1 Gene

  • C20orf200
  • NCRNA00335

Previous GeneCards Identifiers for C20orf166-AS1 Gene

  • GC20M061142

Summaries for C20orf166-AS1 Gene

GeneCards Summary for C20orf166-AS1 Gene

C20orf166-AS1 (C20orf166 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf166-AS1 Gene

Genomics for C20orf166-AS1 Gene

Genomic Location for C20orf166-AS1 Gene

Start:
62,543,070 bp from pter
End:
62,551,561 bp from pter
Size:
8,492 bases
Orientation:
Minus strand

Genomic View for C20orf166-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf166-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf166-AS1 Gene

No data available for Regulatory Elements for C20orf166-AS1 Gene

Proteins for C20orf166-AS1 Gene

  • Protein details for C20orf166-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NR2-C2AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf166-AS1
    Protein Accession:
    Q96NR2
    Secondary Accessions:
    • Q52LN1

    Protein attributes for C20orf166-AS1 Gene

    Size:
    134 amino acids
    Molecular mass:
    14382 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf166-AS1 Gene

Proteomics data for C20orf166-AS1 Gene at MOPED

Protein Expression for C20orf166-AS1 Gene

Post-translational modifications for C20orf166-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C20orf166-AS1 Gene

Domains for C20orf166-AS1 Gene

Gene Families for C20orf166-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for C20orf166-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf166-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

Function for C20orf166-AS1 Gene

Animal Model Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf166-AS1
    • Block miRNA regulation of C20orf166-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf166-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C20orf166-AS1 Gene

    Localization for C20orf166-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C20orf166-AS1 Gene

    Pathways for C20orf166-AS1 Gene

    SuperPathways for C20orf166-AS1 Gene

    No Data Available

    Interacting Proteins for C20orf166-AS1 Gene

    Gene Ontology (GO) - Biological Process for C20orf166-AS1 Gene

    None

    No data available for Pathways by source for C20orf166-AS1 Gene

    Transcripts for C20orf166-AS1 Gene

    mRNA/cDNA for C20orf166-AS1 Gene

    (14) Selected AceView cDNA sequences:
    (6) Additional mRNA sequences :
    (1) REFSEQ mRNAs :
    (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for C20orf166-AS1 Gene

    C20orf166 antisense RNA 1:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf166-AS1
      • Block miRNA regulation of C20orf166-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf166-AS1

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C20orf166-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for C20orf166-AS1 Gene

      No ASD Table

      Relevant External Links for C20orf166-AS1 Gene

      GeneLoc Exon Structure for
      C20orf166-AS1
      ECgene alternative splicing isoforms for
      C20orf166-AS1

      Expression for C20orf166-AS1 Gene

      mRNA expression in normal human tissues for C20orf166-AS1 Gene

      mRNA differential expression in normal tissues according to GTEx for C20orf166-AS1 Gene

      This gene is overexpressed in Colon - Sigmoid (7.2), Heart - Atrial Appendage (5.8), Heart - Left Ventricle (4.5), and Esophagus - Gastroesophageal Junction (4.4).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C20orf166-AS1 Gene

      SOURCE GeneReport for Unigene cluster for C20orf166-AS1 Gene Hs.337024

      genes like me logo Genes that share expressions with C20orf166-AS1: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C20orf166-AS1 Gene

      Orthologs for C20orf166-AS1 Gene

      Evolution for C20orf166-AS1 Gene

      ENSEMBL:
      Gene Tree for C20orf166-AS1 (if available)
      TreeFam:
      Gene Tree for C20orf166-AS1 (if available)

      No data available for Orthologs for C20orf166-AS1 Gene

      Paralogs for C20orf166-AS1 Gene

      No data available for Paralogs for C20orf166-AS1 Gene

      Variants for C20orf166-AS1 Gene

      Sequence variations from dbSNP and Humsavar for C20orf166-AS1 Gene

      SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
      rs3934573 -- 62,546,738(+) TGCGT(G/T)GGGCA nc-transcript-variant
      rs3934574 -- 62,546,280(+) CCGAA(C/T)CCACG nc-transcript-variant
      rs6062240 -- 62,545,081(-) CACCC(C/T)TGACC intron-variant
      rs6062277 -- 62,548,390(-) GGGGC(C/T)CTATG nc-transcript-variant
      rs6062278 -- 62,547,734(-) TGGAT(C/T)TTTTA intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for C20orf166-AS1 Gene

      Variant ID Type Subtype PubMed ID
      nsv913047 CNV Loss 21882294
      esv2422398 CNV Duplication 17116639
      nsv470556 CNV Loss 18288195
      dgv4603n71 CNV Loss 21882294
      nsv459065 CNV Gain 19166990
      nsv913073 CNV Loss 21882294
      dgv4608n71 CNV Loss 21882294
      dgv4610n71 CNV Loss 21882294
      nsv459068 CNV Gain 19166990
      essv22589 CNV CNV 17122850
      nsv913101 CNV Loss 21882294

      Relevant External Links for C20orf166-AS1 Gene

      HapMap Linkage Disequilibrium report
      C20orf166-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

      Disorders for C20orf166-AS1 Gene

      No disorders were found for C20orf166-AS1 Gene.

      No data available for UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

      Publications for C20orf166-AS1 Gene

      1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
      2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
      3. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3
      4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 4
      5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

      Products for C20orf166-AS1 Gene

      • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf166-AS1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf166-AS1
        • Block miRNA regulation of C20orf166-AS1 using miScript Target Protectors

        Sources for C20orf166-AS1 Gene

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