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Aliases for C20orf166-AS1 Gene

Subcategory (RNA class) for C20orf166-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C20orf166-AS1 Gene

  • C20orf166 Antisense RNA 1 2 3 4 5
  • C20orf166 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00335 3 4
  • C20orf200 3 4
  • Chromosome 20 Open Reading Frame 200 2
  • C20orf166 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 335 2

External Ids for C20orf166-AS1 Gene

Previous HGNC Symbols for C20orf166-AS1 Gene

  • C20orf200
  • NCRNA00335

Previous GeneCards Identifiers for C20orf166-AS1 Gene

  • GC20M061142

Summaries for C20orf166-AS1 Gene

GeneCards Summary for C20orf166-AS1 Gene

C20orf166-AS1 (C20orf166 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf166-AS1 Gene

Genomics for C20orf166-AS1 Gene

Regulatory Elements for C20orf166-AS1 Gene

Enhancers for C20orf166-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G062589 1.3 FANTOM5 ENCODE dbSUPER 17.3 -38.6 -38617 1.8 GTF2F1 TBP MXI1 TAF1 MAX SIN3A PAX8 RAD21 POLR2A SMC3 MIR1-1HG C20orf166-AS1 MIR133A2 ENSG00000229882 ENSG00000232121 MIR1-1 ENSG00000264490 WI2-87327B8.2
GH20G062738 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -189.1 -189123 4.9 PKNOX1 ATF1 SIN3A ZNF766 GLIS2 GATA2 ELK1 FOS JUNB MIER2 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR1-1 C20orf166-AS1 MIR1-1HG ENSG00000232121 ENSG00000229882
GH20G062649 1.8 FANTOM5 ENCODE dbSUPER 10.5 -100.5 -100531 4.7 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B OGFR OGFR-AS1 MIR1-1 MIR1-1HG C20orf166-AS1 DIDO1 OSBPL2 DPH3P1 BHLHE23 ENSG00000277496
GH20G062549 1.2 ENCODE dbSUPER 14.4 -7.2 -7150 19.2 SIN3A SLC30A9 GLIS2 FOS ZNF263 SP5 ZHX2 REST KAT8 SREBF1 MIR1-1HG C20orf166-AS1 ENSG00000232121 ENSG00000229882 ENSG00000223669 ENSG00000264490 LAMA5 MIR1-1 GC20P062802
GH20G062425 1.5 Ensembl ENCODE dbSUPER 11 +122.6 122551 6.4 HDGF PKNOX1 ATF1 SIN3A ZBTB7B ZNF207 FOS SP5 REST ZNF592 CABLES2 LOC105372710 ARFGAP1 LAMA5 MIR1-1 MIR1-1HG C20orf166-AS1 RBBP8NL GATA5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C20orf166-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf166-AS1 Gene

Chromosome:
20
Start:
62,543,070 bp from pter
End:
62,551,561 bp from pter
Size:
8,492 bases
Orientation:
Minus strand

Genomic View for C20orf166-AS1 Gene

Genes around C20orf166-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf166-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf166-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf166-AS1 Gene

Proteins for C20orf166-AS1 Gene

  • Protein details for C20orf166-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NR2-C2AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf166-AS1
    Protein Accession:
    Q96NR2
    Secondary Accessions:
    • Q52LN1

    Protein attributes for C20orf166-AS1 Gene

    Size:
    134 amino acids
    Molecular mass:
    14382 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf166-AS1 Gene

Protein Expression for C20orf166-AS1 Gene

Post-translational modifications for C20orf166-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C20orf166-AS1 Gene

Domains & Families for C20orf166-AS1 Gene

Protein Domains for C20orf166-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf166-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf166-AS1 Gene

Function for C20orf166-AS1 Gene

Phenotypes for C20orf166-AS1 Gene

genes like me logo Genes that share phenotypes with C20orf166-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf166-AS1 Gene

Localization for C20orf166-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C20orf166-AS1 Gene

Pathways & Interactions for C20orf166-AS1 Gene

SuperPathways for C20orf166-AS1 Gene

No Data Available

Interacting Proteins for C20orf166-AS1 Gene

Gene Ontology (GO) - Biological Process for C20orf166-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf166-AS1 Gene

Drugs & Compounds for C20orf166-AS1 Gene

No Compound Related Data Available

Transcripts for C20orf166-AS1 Gene

mRNA/cDNA for C20orf166-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf166-AS1 Gene

C20orf166 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf166-AS1 Gene

No ASD Table

Relevant External Links for C20orf166-AS1 Gene

GeneLoc Exon Structure for
C20orf166-AS1
ECgene alternative splicing isoforms for
C20orf166-AS1

Expression for C20orf166-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C20orf166-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf166-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (x7.2), Heart - Atrial Appendage (x5.8), Heart - Left Ventricle (x4.5), and Esophagus - Gastroesophageal Junction (x4.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C20orf166-AS1 Gene



SOURCE GeneReport for Unigene cluster for C20orf166-AS1 Gene:

Hs.337024
genes like me logo Genes that share expression patterns with C20orf166-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C20orf166-AS1 Gene

Orthologs for C20orf166-AS1 Gene

Evolution for C20orf166-AS1 Gene

ENSEMBL:
Gene Tree for C20orf166-AS1 (if available)
TreeFam:
Gene Tree for C20orf166-AS1 (if available)

No data available for Orthologs for C20orf166-AS1 Gene

Paralogs for C20orf166-AS1 Gene

No data available for Paralogs for C20orf166-AS1 Gene

Variants for C20orf166-AS1 Gene

Sequence variations from dbSNP and Humsavar for C20orf166-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000363415 -- 62,550,862(+) CTCTG(C/T)CCCCA intron-variant, utr-variant-5-prime
rs1000437018 -- 62,550,735(+) CTCTC(C/T)CTCTC intron-variant, utr-variant-5-prime
rs1000635568 -- 62,551,516(+) GACTC(A/G)GCACT intron-variant, nc-transcript-variant
rs1000705956 -- 62,551,977(+) CTCAC(A/T)GGTCG intron-variant, upstream-variant-2KB
rs1000770001 -- 62,551,755(+) GAGGC(C/T)CCGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C20orf166-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4343n100 CNV gain 25217958
dgv4344n100 CNV gain 25217958
esv2422398 CNV duplication 17116639
nsv1072554 CNV deletion 25765185
nsv459065 CNV gain 19166990
nsv459068 CNV gain 19166990
nsv470556 CNV loss 18288195
nsv586496 CNV gain 21841781
nsv586501 CNV gain 21841781
nsv953302 CNV deletion 24416366

Relevant External Links for C20orf166-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf166-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C20orf166-AS1 Gene

Disorders for C20orf166-AS1 Gene

Relevant External Links for C20orf166-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf166-AS1

No disorders were found for C20orf166-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf166-AS1 Gene

Publications for C20orf166-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C20orf166-AS1 Gene

Sources for C20orf166-AS1 Gene

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