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Aliases for C20orf141 Gene

Aliases for C20orf141 Gene

  • Chromosome 20 Open Reading Frame 141 2 3
  • Uncharacterized Protein C20orf141 3
  • DJ860F19.4 3

External Ids for C20orf141 Gene

Previous GeneCards Identifiers for C20orf141 Gene

  • GC20P002783
  • GC20P002743
  • GC20P002790
  • GC20P002803
  • GC20P002749

Summaries for C20orf141 Gene

GeneCards Summary for C20orf141 Gene

C20orf141 (Chromosome 20 Open Reading Frame 141) is a Protein Coding gene. An important paralog of this gene is ENSG00000241690.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf141 Gene

Genomics for C20orf141 Gene

Regulatory Elements for C20orf141 Gene

Genomic Location for C20orf141 Gene

Start:
2,814,987 bp from pter
End:
2,815,833 bp from pter
Size:
847 bases
Orientation:
Plus strand

Genomic View for C20orf141 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf141 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf141 Gene

Proteins for C20orf141 Gene

  • Protein details for C20orf141 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NUB4-CT141_HUMAN
    Recommended name:
    Uncharacterized protein C20orf141
    Protein Accession:
    Q9NUB4
    Secondary Accessions:

    Protein attributes for C20orf141 Gene

    Size:
    165 amino acids
    Molecular mass:
    17394 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf141 Gene

Proteomics data for C20orf141 Gene at MOPED

Post-translational modifications for C20orf141 Gene

No Post-translational modifications

Other Protein References for C20orf141 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for C20orf141 Gene

Domains for C20orf141 Gene

Protein Domains for C20orf141 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C20orf141 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf141: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf141 Gene

Function for C20orf141 Gene

Phenotypes for C20orf141 Gene

GenomeRNAi human phenotypes for C20orf141:
genes like me logo Genes that share phenotypes with C20orf141: view

Animal Model Products

CRISPR Products

miRNA for C20orf141 Gene

miRTarBase miRNAs that target C20orf141

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf141
    • Block miRNA regulation of C20orf141 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf141

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf141 Gene

    Localization for C20orf141 Gene

    Subcellular locations from UniProtKB/Swiss-Prot for C20orf141 Gene

    Membrane; Single-pass membrane protein.

    Subcellular locations from

    COMPARTMENTS
    Jensen Localization Image for C20orf141 Gene COMPARTMENTS Subcellular localization image for C20orf141 gene
    Compartment Confidence
    plasma membrane 3
    extracellular 2
    mitochondrion 1

    Gene Ontology (GO) - Cellular Components for C20orf141 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0016021 integral component of membrane IEA --
    genes like me logo Genes that share ontologies with C20orf141: view

    Pathways for C20orf141 Gene

    SuperPathways for C20orf141 Gene

    No Data Available

    Interacting Proteins for C20orf141 Gene

    STRING Interaction Network Preview (showing 1 interactants - click image to see details)
    http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000369963%0d%0a9606.ENSP00000403397%0d%0a
    Selected Interacting proteins: ENSP00000369963 for C20orf141 Gene via STRING

    Symbol External ID(s) Details
    ZDHHC17

    Gene Ontology (GO) - Biological Process for C20orf141 Gene

    None

    No data available for Pathways by source for C20orf141 Gene

    Transcripts for C20orf141 Gene

    mRNA/cDNA for C20orf141 Gene

    Unigene Clusters for C20orf141 Gene

    Chromosome 20 open reading frame 141:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf141
      • Block miRNA regulation of C20orf141 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf141

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for C20orf141 Gene

      No ASD Table

      Relevant External Links for C20orf141 Gene

      GeneLoc Exon Structure for
      C20orf141
      ECgene alternative splicing isoforms for
      C20orf141

      Expression for C20orf141 Gene

      mRNA expression in normal human tissues for C20orf141 Gene

      mRNA differential expression in normal tissues according to GTEx for C20orf141 Gene

      This gene is overexpressed in Testis (51.1).

      Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C20orf141 Gene

      SOURCE GeneReport for Unigene cluster for C20orf141 Gene Hs.352187

      genes like me logo Genes that share expressions with C20orf141: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C20orf141 Gene

      Orthologs for C20orf141 Gene

      This gene was present in the common ancestor of mammals.

      Orthologs for C20orf141 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia C20H20orf141 35
      • 98.59 (n)
      • 98.18 (a)
      C20orf141 36
      • 98 (a)
      OneToOne
      cow
      (Bos Taurus)
      Mammalia C13H20orf141 35
      • 80.66 (n)
      • 75.31 (a)
      C20orf141 36
      • 74 (a)
      OneToOne
      dog
      (Canis familiaris)
      Mammalia C20orf141 36
      • 70 (a)
      OneToOne
      C24H20orf141 35
      • 82.21 (n)
      • 72.39 (a)
      mouse
      (Mus musculus)
      Mammalia 1700020A23Rik 35
      • 75.66 (n)
      • 65.08 (a)
      1700020A23Rik 16
      1700020A23Rik 36
      • 63 (a)
      OneToOne
      rat
      (Rattus norvegicus)
      Mammalia LOC100365450 35
      • 75.66 (n)
      • 66.67 (a)
      Species with no ortholog for C20orf141:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for C20orf141 Gene

      ENSEMBL:
      Gene Tree for C20orf141 (if available)
      TreeFam:
      Gene Tree for C20orf141 (if available)

      Paralogs for C20orf141 Gene

      Paralogs for C20orf141 Gene

      Selected SIMAP similar genes for C20orf141 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with C20orf141: view

      Variants for C20orf141 Gene

      Sequence variations from dbSNP and Humsavar for C20orf141 Gene

      SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
      rs6037418 -- 2,813,575(+) atggc(C/T)taata upstream-variant-2KB
      rs7265164 -- 2,813,119(+) agaaa(A/G)gtttt upstream-variant-2KB
      rs115199817 -- 2,813,564(+) GCAAC(A/G)CAAGA upstream-variant-2KB
      rs117455978 -- 2,813,712(+) CATAG(C/T)AAATC upstream-variant-2KB
      rs138286147 -- 2,813,603(+) AGTGC(C/T)TGGCA upstream-variant-2KB

      Structural Variations from Database of Genomic Variants (DGV) for C20orf141 Gene

      Variant ID Type Subtype PubMed ID
      nsv833895 CNV Loss 17160897
      nsv522009 CNV Gain 19592680
      nsv510780 CNV Loss 20534489
      nsv518364 CNV Loss 19592680

      Relevant External Links for C20orf141 Gene

      HapMap Linkage Disequilibrium report
      C20orf141

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf141 Gene

      Disorders for C20orf141 Gene

      No disorders were found for C20orf141 Gene.

      No data available for UniProtKB/Swiss-Prot for C20orf141 Gene

      Publications for C20orf141 Gene

      1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
      2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
      3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
      4. White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder. (PMID: 23218918) Sprooten E. … McIntosh A.M. (Psychiatry Res 2013) 3
      5. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3

      Products for C20orf141 Gene

      Sources for C20orf141 Gene

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