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Aliases for C2-AS1 Gene

Subcategory (RNA class) for C2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for C2-AS1 Gene

  • C2 Antisense RNA 1 2 3 5

External Ids for C2-AS1 Gene

Previous GeneCards Identifiers for C2-AS1 Gene

  • GC06U902559

Summaries for C2-AS1 Gene

GeneCards Summary for C2-AS1 Gene

C2-AS1 (C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2-AS1 Gene

Genomics for C2-AS1 Gene

Regulatory Elements for C2-AS1 Gene

Enhancers for C2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H031940 0.7 ENCODE 0.7 +1.4 1356 0.2 SIX4 TFAP4 SAP130 FEZF1 TEAD3 GATA3 STAT1 KLF6 TEAD1 ELF1 SKIV2L C2-AS1 ENSG00000244255
GH06H031928 0.8 ENCODE 0.4 +12.2 12249 1.2 BCOR ELF3 PKNOX1 SAP130 ARID4B ZNF384 CEBPG ZSCAN9 TRIM24 ZNF584 SKIV2L MIR1236 STK19 C4A ZBTB12 NEU1 C2 EHMT2 VARS ENSG00000201555
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C2-AS1 Gene

Genomic Locations for C2-AS1 Gene
7,251 bases
Minus strand

Genomic View for C2-AS1 Gene

Genes around C2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for C2-AS1 Gene

Post-translational modifications for C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C2-AS1 Gene

Domains & Families for C2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C2-AS1 Gene

Function for C2-AS1 Gene

Phenotypes From GWAS Catalog for C2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C2-AS1 Gene

Localization for C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C2-AS1 Gene

Pathways & Interactions for C2-AS1 Gene

SuperPathways for C2-AS1 Gene

No Data Available

Interacting Proteins for C2-AS1 Gene

Gene Ontology (GO) - Biological Process for C2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for C2-AS1 Gene

Drugs & Compounds for C2-AS1 Gene

No Compound Related Data Available

Transcripts for C2-AS1 Gene

mRNA/cDNA for C2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C2-AS1 Gene

No ASD Table

Relevant External Links for C2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C2-AS1 Gene

Orthologs for C2-AS1 Gene

Evolution for C2-AS1 Gene

Gene Tree for C2-AS1 (if available)
Gene Tree for C2-AS1 (if available)

No data available for Orthologs for C2-AS1 Gene

Paralogs for C2-AS1 Gene

No data available for Paralogs for C2-AS1 Gene

Variants for C2-AS1 Gene

Sequence variations from dbSNP and Humsavar for C2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs9332739 Pathogenic 31,936,027(+) ACTGA(C/G)GTGAT intron-variant, reference, missense
rs9332736 Likely pathogenic 31,934,291(+) TCATG(-/CAGACTCCTGATTCCTGACCCTGTCCAC/GTGGACAGGGTCAGGAATCAGGAGTCTG)CCTGC intron-variant, downstream-variant-500B, reference, frameshift-variant
rs1042663 Likely benign 31,937,353(+) TATGC(A/G)GCCTT intron-variant, reference, synonymous-codon
rs117576077 Likely benign 31,939,220(+) ATTCT(C/T)TTTGT intron-variant
rs140225293 Likely benign 31,943,100(+) GCTGG(A/G)TGAGT upstream-variant-2KB, splice-donor-variant

Structural Variations from Database of Genomic Variants (DGV) for C2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830628 CNV loss 17160897
nsv601960 CNV loss 21841781
nsv509126 CNV insertion 20534489
nsv508399 CNV deletion 20534489
nsv428141 CNV gain+loss 18775914
nsv1126749 CNV deletion 24896259
nsv1112900 CNV deletion 24896259
nsv1073969 CNV deletion 25765185
esv3570963 CNV loss 25503493
esv2759415 CNV gain+loss 17122850
dgv10463n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10403n54 CNV loss 21841781

Relevant External Links for C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C2-AS1 Gene

Disorders for C2-AS1 Gene

Relevant External Links for C2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C2-AS1 Gene

Publications for C2-AS1 Gene

  1. Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes. (PMID: 22705344) Sobrin L … Seddon JM (Ophthalmology 2012) 3 60
  2. Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration. (PMID: 21665990) Yu Y … Seddon JM (Human molecular genetics 2011) 3 60
  3. Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration. (PMID: 20385819) Chen W … Swaroop A (Proceedings of the National Academy of Sciences of the United States of America 2010) 3 60

Products for C2-AS1 Gene

Sources for C2-AS1 Gene

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