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Aliases for C1orf87 Gene

Aliases for C1orf87 Gene

  • Chromosome 1 Open Reading Frame 87 2 3
  • Carcinoma-Related EF-Hand Protein 2 3
  • Uncharacterized Protein C1orf87 3
  • CREF 3

External Ids for C1orf87 Gene

Previous GeneCards Identifiers for C1orf87 Gene

  • GC01M060169
  • GC01M060228
  • GC01M060452
  • GC01M058567

Summaries for C1orf87 Gene

GeneCards Summary for C1orf87 Gene

C1orf87 (Chromosome 1 Open Reading Frame 87) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf87 Gene

Genomics for C1orf87 Gene

Regulatory Elements for C1orf87 Gene

Genomic Location for C1orf87 Gene

Start:
59,987,269 bp from pter
End:
60,073,770 bp from pter
Size:
86,502 bases
Orientation:
Minus strand

Genomic View for C1orf87 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf87 Gene

Proteins for C1orf87 Gene

  • Protein details for C1orf87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N0U7-CA087_HUMAN
    Recommended name:
    Uncharacterized protein C1orf87
    Protein Accession:
    Q8N0U7
    Secondary Accessions:
    • Q6ZU07
    • Q8IVS0

    Protein attributes for C1orf87 Gene

    Size:
    546 amino acids
    Molecular mass:
    62035 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf87 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf87 Gene

Proteomics data for C1orf87 Gene at MOPED

Post-translational modifications for C1orf87 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf87 Gene

Domains for C1orf87 Gene

Protein Domains for C1orf87 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf87: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf87 Gene

Function for C1orf87 Gene

Gene Ontology (GO) - Molecular Function for C1orf87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding --
genes like me logo Genes that share ontologies with C1orf87: view

Phenotypes for C1orf87 Gene

GenomeRNAi human phenotypes for C1orf87:
genes like me logo Genes that share phenotypes with C1orf87: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf87 Gene

Localization for C1orf87 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf87 Gene COMPARTMENTS Subcellular localization image for C1orf87 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf87 Gene

Pathways for C1orf87 Gene

SuperPathways for C1orf87 Gene

No Data Available

Interacting Proteins for C1orf87 Gene

Gene Ontology (GO) - Biological Process for C1orf87 Gene

None

No data available for Pathways by source for C1orf87 Gene

Transcripts for C1orf87 Gene

mRNA/cDNA for C1orf87 Gene

Unigene Clusters for C1orf87 Gene

Chromosome 1 open reading frame 87:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf87

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf87 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14a · 14b · 14c · 14d ^ 15 ^ 16
SP1: - - - -
SP2:
SP3: - - -
SP4: - - - -
SP5: -

Relevant External Links for C1orf87 Gene

GeneLoc Exon Structure for
C1orf87
ECgene alternative splicing isoforms for
C1orf87

Expression for C1orf87 Gene

mRNA expression in normal human tissues for C1orf87 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf87 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (9.0), Testis (7.7), Brain - Hypothalamus (6.3), Fallopian Tube (5.2), and Brain - Nucleus accumbens (basal ganglia) (5.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf87 Gene

SOURCE GeneReport for Unigene cluster for C1orf87 Gene Hs.47385

genes like me logo Genes that share expressions with C1orf87: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for C1orf87 Gene

Orthologs for C1orf87 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C1orf87 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf87 35
  • 99.63 (n)
  • 99.27 (a)
C1orf87 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C1orf87 36
  • 75 (a)
OneToOne
C3H1orf87 35
  • 82.91 (n)
  • 74.54 (a)
dog
(Canis familiaris)
Mammalia C1ORF87 36
  • 73 (a)
OneToOne
C5H1orf87 35
  • 81.8 (n)
  • 73.71 (a)
mouse
(Mus musculus)
Mammalia Gm12695 35
  • 75.87 (n)
  • 64.64 (a)
Gm12695 16
Gm12695 36
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf87 36
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1560146 35
  • 76 (n)
  • 64.5 (a)
Species with no ortholog for C1orf87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf87 Gene

ENSEMBL:
Gene Tree for C1orf87 (if available)
TreeFam:
Gene Tree for C1orf87 (if available)

Paralogs for C1orf87 Gene

No data available for Paralogs for C1orf87 Gene

Variants for C1orf87 Gene

Sequence variations from dbSNP and Humsavar for C1orf87 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs586404 -- 60,001,461(+) TTTGG(A/G)GGCCG intron-variant
rs587204 -- 60,038,986(+) TTGCA(C/G)TAATA intron-variant
rs594463 -- 60,075,160(+) AACTC(C/T)GACAA upstream-variant-2KB
rs598202 -- 60,032,411(+) ATTCA(A/G)TTGGC intron-variant
rs601184 -- 59,997,537(+) CAAAA(A/G)AAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf87 Gene

Variant ID Type Subtype PubMed ID
esv259663 OTHER Complex 20981092
esv259709 OTHER Complex 20981092
esv271154 CNV Insertion 20981092
esv2675852 CNV Deletion 23128226
esv1587281 CNV Insertion 17803354

Relevant External Links for C1orf87 Gene

HapMap Linkage Disequilibrium report
C1orf87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf87 Gene

Disorders for C1orf87 Gene

Relevant External Links for C1orf87

Genetic Association Database (GAD)
C1orf87
genes like me logo Genes that share disorders with C1orf87: view

No data available for UniProtKB/Swiss-Prot for C1orf87 Gene

Publications for C1orf87 Gene

  1. Open reading frames associated with cancer in the dark matter of the human genome. (PMID: 25048349) Delgado A.P. … Narayanan R. (Cancer Genomics Proteomics 2014) 2 3
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 48
  3. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin E.J. … Vasan R.S. (BMC Med. Genet. 2007) 48
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 48
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 48

Products for C1orf87 Gene

Sources for C1orf87 Gene

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