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Aliases for C1orf54 Gene

Aliases for C1orf54 Gene

  • Chromosome 1 Open Reading Frame 54 2 3

External Ids for C1orf54 Gene

Previous GeneCards Identifiers for C1orf54 Gene

  • GC01P147059
  • GC01P148507
  • GC01P150240
  • GC01P121623

Summaries for C1orf54 Gene

GeneCards Summary for C1orf54 Gene

C1orf54 (Chromosome 1 Open Reading Frame 54) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf54 Gene

Genomics for C1orf54 Gene

Regulatory Elements for C1orf54 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C1orf54 Gene

Start:
150,268,200 bp from pter
End:
150,280,924 bp from pter
Size:
12,725 bases
Orientation:
Plus strand

Genomic View for C1orf54 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf54 Gene

Proteins for C1orf54 Gene

  • Protein details for C1orf54 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WWF1-CA054_HUMAN
    Recommended name:
    Uncharacterized protein C1orf54
    Protein Accession:
    Q8WWF1
    Secondary Accessions:
    • Q9H5P3

    Protein attributes for C1orf54 Gene

    Size:
    131 amino acids
    Molecular mass:
    14923 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf54 Gene

Proteomics data for C1orf54 Gene at MOPED

Post-translational modifications for C1orf54 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf54 Gene

No data available for DME Specific Peptides for C1orf54 Gene

Domains for C1orf54 Gene

Protein Domains for C1orf54 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf54: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf54 Gene

Function for C1orf54 Gene

Phenotypes for C1orf54 Gene

GenomeRNAi human phenotypes for C1orf54:
genes like me logo Genes that share phenotypes with C1orf54: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf54

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf54 Gene

Localization for C1orf54 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf54 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf54 Gene COMPARTMENTS Subcellular localization image for C1orf54 gene
Compartment Confidence
extracellular 3
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for C1orf54 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C1orf54: view

Pathways for C1orf54 Gene

SuperPathways for C1orf54 Gene

No Data Available

Interacting Proteins for C1orf54 Gene

Gene Ontology (GO) - Biological Process for C1orf54 Gene

None

No data available for Pathways by source for C1orf54 Gene

Transcripts for C1orf54 Gene

Unigene Clusters for C1orf54 Gene

Chromosome 1 open reading frame 54:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf54

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf54 Gene

No ASD Table

Relevant External Links for C1orf54 Gene

GeneLoc Exon Structure for
C1orf54
ECgene alternative splicing isoforms for
C1orf54

Expression for C1orf54 Gene

mRNA expression in normal human tissues for C1orf54 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for C1orf54 Gene Hs.91283

genes like me logo Genes that share expressions with C1orf54: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C1orf54 Gene

Orthologs for C1orf54 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C1orf54 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf54 35
  • 91.09 (n)
  • 87.02 (a)
C1ORF54 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C1orf54 36
  • 73 (a)
OneToOne
C3H1orf54 35
  • 83.33 (n)
  • 73.85 (a)
dog
(Canis familiaris)
Mammalia C17H1orf54 35
  • 87.53 (n)
  • 78.63 (a)
mouse
(Mus musculus)
Mammalia BC028528 35
  • 75.32 (n)
  • 62.6 (a)
BC028528 16
BC028528 36
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf54 36
  • 30 (a)
OneToOne
Species with no ortholog for C1orf54:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf54 Gene

ENSEMBL:
Gene Tree for C1orf54 (if available)
TreeFam:
Gene Tree for C1orf54 (if available)

Paralogs for C1orf54 Gene

No data available for Paralogs for C1orf54 Gene

Variants for C1orf54 Gene

Sequence variations from dbSNP and Humsavar for C1orf54 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2298165 -- 150,276,273(+) TGGGG(A/G)GGAGA intron-variant
rs2298166 -- 150,276,404(+) CCTGA(A/G)CTTAA intron-variant
rs4926418 -- 150,275,338(+) CCAAA(A/T)TTTTT intron-variant
rs6676685 -- 150,274,906(+) agact(A/C)cgtca intron-variant
rs10157197 -- 150,278,225(+) GAGGA(A/G)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf54 Gene

Variant ID Type Subtype PubMed ID
nsv872415 CNV Loss 21882294

Relevant External Links for C1orf54 Gene

HapMap Linkage Disequilibrium report
C1orf54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf54 Gene

Disorders for C1orf54 Gene

Relevant External Links for C1orf54

Genetic Association Database (GAD)
C1orf54
genes like me logo Genes that share disorders with C1orf54: view

No data available for UniProtKB/Swiss-Prot for C1orf54 Gene

Publications for C1orf54 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  5. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 48

Products for C1orf54 Gene

Sources for C1orf54 Gene

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