Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1orf53 Gene

Aliases for C1orf53 Gene

  • Chromosome 1 Open Reading Frame 53 2 3 5

External Ids for C1orf53 Gene

Previous GeneCards Identifiers for C1orf53 Gene

  • GC01P194602
  • GC01P196138
  • GC01P169027

Summaries for C1orf53 Gene

GeneCards Summary for C1orf53 Gene

C1orf53 (Chromosome 1 Open Reading Frame 53) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf53 Gene

Genomics for C1orf53 Gene

Regulatory Elements for C1orf53 Gene

Enhancers for C1orf53 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F197901 1.1 ENCODE 18.1 +0.1 132 1.6 PKNOX1 ARNT CREB3L1 ZFP64 SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 C1orf53 LHX9
GH01F198120 1.4 FANTOM5 Ensembl ENCODE 9.3 +219.7 219658 3.5 TBP PKNOX1 CBX3 ZNF133 RAD21 ZBTB40 RFX5 RCOR1 FOS CEBPB C1orf53 NEK7 GC01P198155 LHX9
GH01F198117 1.3 FANTOM5 Ensembl ENCODE 9.5 +215.6 215593 1.6 TBP ATF1 JUN BRCA1 RAD21 YY1 RFX5 SCRT2 HNF4G RCOR1 C1orf53 ATP6V1G3 NEK7 GC01P198155 LHX9
GH01F198461 1.1 FANTOM5 Ensembl ENCODE 10.7 +560.1 560051 1.3 MAFF JUND STAT1 JUN NR3C1 MAFK ATP6V1G3 LHX9 C1orf53 LOC105371677 GC01P198285
GH01F197781 1.1 Ensembl ENCODE 10.1 -119.4 -119398 2.7 BCOR HDAC1 ZNF146 PKNOX1 CBX3 TAL1 ZMYM3 NFXL1 ZBTB40 CHAMP1 C1orf53 LHX9 DENND1B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1orf53 on UCSC Golden Path with GeneCards custom track

Promoters for C1orf53 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001527274 149 1800 PKNOX1 ARNT CREB3L1 ZFP64 SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for C1orf53 Gene

197,902,552 bp from pter
197,907,367 bp from pter
4,816 bases
Plus strand

Genomic View for C1orf53 Gene

Genes around C1orf53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf53 Gene

Proteins for C1orf53 Gene

  • Protein details for C1orf53 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C1orf53
    Protein Accession:
    Secondary Accessions:
    • A1L4N2
    • Q5VUE4

    Protein attributes for C1orf53 Gene

    145 amino acids
    Molecular mass:
    15483 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAH71759.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for C1orf53 Gene

Post-translational modifications for C1orf53 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf53 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf53 Gene

Domains & Families for C1orf53 Gene

Protein Domains for C1orf53 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf53: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf53 Gene

Function for C1orf53 Gene

Phenotypes for C1orf53 Gene

genes like me logo Genes that share phenotypes with C1orf53: view

Animal Model Products

miRNA for C1orf53 Gene

miRTarBase miRNAs that target C1orf53

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1orf53 Gene

Localization for C1orf53 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1orf53 gene
Compartment Confidence
mitochondrion 3
extracellular 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf53 Gene

Pathways & Interactions for C1orf53 Gene

SuperPathways for C1orf53 Gene

No Data Available

Interacting Proteins for C1orf53 Gene

Gene Ontology (GO) - Biological Process for C1orf53 Gene


No data available for Pathways by source and SIGNOR curated interactions for C1orf53 Gene

Transcripts for C1orf53 Gene

mRNA/cDNA for C1orf53 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf53 Gene

Chromosome 1 open reading frame 53:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf53 Gene

No ASD Table

Relevant External Links for C1orf53 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C1orf53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1orf53 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf53 Gene

This gene is overexpressed in Liver (x4.7).

Protein differential expression in normal tissues from HIPED for C1orf53 Gene

This gene is overexpressed in Gallbladder (36.5) and Adrenal (32.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C1orf53 Gene

Protein tissue co-expression partners for C1orf53 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1orf53 Gene:


SOURCE GeneReport for Unigene cluster for C1orf53 Gene:


mRNA Expression by UniProt/SwissProt for C1orf53 Gene:

Tissue specificity: Expressed in retina and retinoblastoma.
genes like me logo Genes that share expression patterns with C1orf53: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for C1orf53 Gene

Orthologs for C1orf53 Gene

This gene was present in the common ancestor of animals.

Orthologs for C1orf53 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1orf53 35
  • 100 (a)
C1H1orf53 34
  • 99.31 (n)
(Rattus norvegicus)
Mammalia RGD1566099 34
  • 81.42 (n)
(Bos Taurus)
Mammalia LOC781739 34
  • 79.06 (n)
(Canis familiaris)
Mammalia C7H1orf53 34
  • 77.44 (n)
C1orf53 35
  • 68 (a)
(Mus musculus)
Mammalia 2310009B15Rik 34 16 35
  • 76.96 (n)
(Monodelphis domestica)
Mammalia C1orf53 35
  • 55 (a)
(Gallus gallus)
Aves C1orf53 35
  • 45 (a)
(Danio rerio)
Actinopterygii C22H1orf53 35
  • 41 (a)
(Caenorhabditis elegans)
Secernentea mrpl-14 35
  • 21 (a)
Species where no ortholog for C1orf53 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for C1orf53 Gene

Gene Tree for C1orf53 (if available)
Gene Tree for C1orf53 (if available)

Paralogs for C1orf53 Gene

No data available for Paralogs for C1orf53 Gene

Variants for C1orf53 Gene

Sequence variations from dbSNP and Humsavar for C1orf53 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1039286 -- 197,901,180(+) CATCT(C/T)CACCA upstream-variant-2KB
rs10922327 -- 197,901,248(+) TATCT(A/T)TATAA upstream-variant-2KB
rs111778590 -- 197,901,575(+) ATTTT(G/T)TATTC upstream-variant-2KB
rs112131015 -- 197,905,240(+) ACACA(A/C)CAGCA intron-variant
rs112962629 -- 197,901,233(+) TCTAT(-/ATAAG)ATATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C1orf53 Gene

Variant ID Type Subtype PubMed ID
dgv558n100 CNV gain 25217958
esv2762214 CNV gain 21179565

Variation tolerance for C1orf53 Gene

Residual Variation Intolerance Score: 80% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.80; 33.90% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1orf53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf53 Gene

Disorders for C1orf53 Gene

Relevant External Links for C1orf53

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C1orf53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf53 Gene

Publications for C1orf53 Gene

  1. KIF14 is a candidate oncogene in the 1q minimal region of genomic gain in multiple cancers. (PMID: 15897902) Corson T.W. … Gallie B.L. (Oncogene 2005) 2 3 4 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64
  5. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3 64

Products for C1orf53 Gene

Sources for C1orf53 Gene

Loading form....