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Aliases for C1orf52 Gene

Aliases for C1orf52 Gene

  • Chromosome 1 Open Reading Frame 52 2 3 5
  • BCL10-Associated Gene Protein 3 4
  • UPF0690 Protein C1orf52 3
  • Gm117 3
  • BAG 4

External Ids for C1orf52 Gene

Previous GeneCards Identifiers for C1orf52 Gene

  • GC01M085428
  • GC01M085715
  • GC01M083826

Summaries for C1orf52 Gene

GeneCards Summary for C1orf52 Gene

C1orf52 (Chromosome 1 Open Reading Frame 52) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding.

Additional gene information for C1orf52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf52 Gene

Genomics for C1orf52 Gene

Regulatory Elements for C1orf52 Gene

Enhancers for C1orf52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H085520 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -264.4 -264430 7 HDGF PKNOX1 ZNF133 FEZF1 BRCA1 ZNF2 ZNF121 FOS ATF7 DEK ZNHIT6 CYR61 DDAH1 C1orf52 ENSG00000282057 ENSG00000273264
GH01H085575 1.7 FANTOM5 ENCODE dbSUPER 11.5 -321.1 -321129 11 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ODF2L ZNHIT6 ENSG00000232622 LOC100420166 C1orf52 BCL10 CYR61 GC01P085583
GH01H086154 0.9 ENCODE 10.8 -896.4 -896400 2 GLIS2 ZNF366 EGR2 ZNF202 YY2 ZEB2 ZNF398 ZNF843 ZNF518A ZSCAN16 ODF2L ZNHIT6 C1orf52 COL24A1 GC01M086135
GH01H085258 1 ENCODE 8.8 -0.1 -97 2 PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 YY1 ETS1 GLIS2 ELK1 LOC646626 C1orf52 BCL10 DDAH1 ENSG00000223254
GH01H085262 0.6 ENCODE dbSUPER 8.8 -3.5 -3545 0 RFX1 C1orf52 ENSG00000223254
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1orf52 on UCSC Golden Path with GeneCards custom track

Promoters for C1orf52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000009194 372 1401 PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 YY1 ETS1 GLIS2 ELK1

Genomic Location for C1orf52 Gene

Chromosome:
1
Start:
85,249,953 bp from pter
End:
85,259,672 bp from pter
Size:
9,720 bases
Orientation:
Minus strand

Genomic View for C1orf52 Gene

Genes around C1orf52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf52 Gene

Proteins for C1orf52 Gene

  • Protein details for C1orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6N3-CA052_HUMAN
    Recommended name:
    UPF0690 protein C1orf52
    Protein Accession:
    Q8N6N3
    Secondary Accessions:
    • B3KX89
    • Q8TDK5
    • Q8TDK6

    Protein attributes for C1orf52 Gene

    Size:
    182 amino acids
    Molecular mass:
    20599 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf52 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf52 Gene

Post-translational modifications for C1orf52 Gene

  • Ubiquitination at posLast=7878
  • Modification sites at PhosphoSitePlus

Other Protein References for C1orf52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf52 Gene

Domains & Families for C1orf52 Gene

Gene Families for C1orf52 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C1orf52 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf52 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N6N3

UniProtKB/Swiss-Prot:

CA052_HUMAN :
  • Belongs to the UPF0690 family.
Family:
  • Belongs to the UPF0690 family.
genes like me logo Genes that share domains with C1orf52: view

Function for C1orf52 Gene

Gene Ontology (GO) - Molecular Function for C1orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
genes like me logo Genes that share ontologies with C1orf52: view

Phenotypes for C1orf52 Gene

genes like me logo Genes that share phenotypes with C1orf52: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C1orf52
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1orf52 Gene

Localization for C1orf52 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1orf52 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for C1orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
genes like me logo Genes that share ontologies with C1orf52: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C1orf52 Gene

Pathways & Interactions for C1orf52 Gene

SuperPathways for C1orf52 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1orf52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf52 Gene

Drugs & Compounds for C1orf52 Gene

No Compound Related Data Available

Transcripts for C1orf52 Gene

Unigene Clusters for C1orf52 Gene

Chromosome 1 open reading frame 52:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C1orf52
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf52 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2: -

Relevant External Links for C1orf52 Gene

GeneLoc Exon Structure for
C1orf52
ECgene alternative splicing isoforms for
C1orf52

Expression for C1orf52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1orf52 Gene

Protein differential expression in normal tissues from HIPED for C1orf52 Gene

This gene is overexpressed in Cervix (44.9) and Lung (19.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C1orf52 Gene



NURSA nuclear receptor signaling pathways regulating expression of C1orf52 Gene:

C1orf52

SOURCE GeneReport for Unigene cluster for C1orf52 Gene:

Hs.26226

mRNA Expression by UniProt/SwissProt for C1orf52 Gene:

Q8N6N3-CA052_HUMAN
Tissue specificity: Expressed in all tissues tested including heart, placenta, liver, skeletal muscle, kidney and pancreas. Weak expression in brain and lung.

Evidence on tissue expression from TISSUES for C1orf52 Gene

  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with C1orf52: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1orf52 Gene

Orthologs for C1orf52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf52 34
  • 100 (a)
OneToOne
C1H1orf52 33
  • 99.82 (n)
dog
(Canis familiaris)
Mammalia C1orf52 34
  • 94 (a)
OneToOne
C6H1orf52 33
  • 89.74 (n)
cow
(Bos Taurus)
Mammalia C1orf52 34
  • 93 (a)
OneToOne
C3H1orf52 33
  • 90.29 (n)
rat
(Rattus norvegicus)
Mammalia RGD1560065 33
  • 82.92 (n)
mouse
(Mus musculus)
Mammalia 2410004B18Rik 33 16 34
  • 82.04 (n)
oppossum
(Monodelphis domestica)
Mammalia C1orf52 34
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves C8H1ORF52 33 34
  • 67.05 (n)
lizard
(Anolis carolinensis)
Reptilia C1orf52 34
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c1orf52 33
  • 71.01 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:65873 33
  • 58.05 (n)
CZv9_NA991H1orf52 34
  • 44 (a)
OneToOne
zgc65873 33
Species where no ortholog for C1orf52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf52 Gene

ENSEMBL:
Gene Tree for C1orf52 (if available)
TreeFam:
Gene Tree for C1orf52 (if available)

Paralogs for C1orf52 Gene

No data available for Paralogs for C1orf52 Gene

Variants for C1orf52 Gene

Sequence variations from dbSNP and Humsavar for C1orf52 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000228999 -- 85,253,500(+) TCTAA(C/T)TCCCA intron-variant
rs1000262593 -- 85,259,715(+) CTCGC(A/G)TGGCC upstream-variant-2KB
rs1001007404 -- 85,256,327(+) TTCTG(C/T)ATCAG intron-variant
rs1001357051 -- 85,253,394(+) CTGCC(C/T)CATCA intron-variant
rs1001527180 -- 85,259,142(+) TGGGT(C/G)TCCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf52 Gene

Variant ID Type Subtype PubMed ID
esv34165 CNV loss 18971310
nsv475692 CNV novel sequence insertion 20440878
nsv830459 CNV loss 17160897

Variation tolerance for C1orf52 Gene

Residual Variation Intolerance Score: 42.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.71; 15.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1orf52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1orf52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf52 Gene

Disorders for C1orf52 Gene

Relevant External Links for C1orf52

Human Genome Epidemiology (HuGE) Navigator
C1orf52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1orf52

No disorders were found for C1orf52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf52 Gene

Publications for C1orf52 Gene

  1. Identification of six novel genes by experimental validation of GeneMachine predicted genes. (PMID: 11891061) Makalowska I … Carpten JD (Gene 2002) 2 3 4 60
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 60
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen JV … Mann M (Cell 2006) 3 4 60
  4. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PMID: 15592455) Rush J … Comb MJ (Nature biotechnology 2005) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for C1orf52 Gene

Sources for C1orf52 Gene

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