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Aliases for C1orf50 Gene

Aliases for C1orf50 Gene

  • Chromosome 1 Open Reading Frame 50 2 3

External Ids for C1orf50 Gene

Previous GeneCards Identifiers for C1orf50 Gene

  • GC01P042903
  • GC01P043005
  • GC01P043232
  • GC01P041352

Summaries for C1orf50 Gene

GeneCards Summary for C1orf50 Gene

C1orf50 (Chromosome 1 Open Reading Frame 50) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf50 Gene

Genomics for C1orf50 Gene

Regulatory Elements for C1orf50 Gene

Genomic Location for C1orf50 Gene

Start:
42,767,245 bp from pter
End:
42,794,493 bp from pter
Size:
27,249 bases
Orientation:
Plus strand

Genomic View for C1orf50 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf50 Gene

Proteins for C1orf50 Gene

  • Protein details for C1orf50 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV19-CA050_HUMAN
    Recommended name:
    Uncharacterized protein C1orf50
    Protein Accession:
    Q9BV19
    Secondary Accessions:

    Protein attributes for C1orf50 Gene

    Size:
    199 amino acids
    Molecular mass:
    21877 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf50 Gene

Proteomics data for C1orf50 Gene at MOPED

Post-translational modifications for C1orf50 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf50 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf50 Gene

Domains for C1orf50 Gene

Protein Domains for C1orf50 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf50 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf50: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf50 Gene

Function for C1orf50 Gene

Gene Ontology (GO) - Molecular Function for C1orf50 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C1orf50: view

Phenotypes for C1orf50 Gene

GenomeRNAi human phenotypes for C1orf50:
genes like me logo Genes that share phenotypes with C1orf50: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf50 Gene

Localization for C1orf50 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf50 Gene COMPARTMENTS Subcellular localization image for C1orf50 gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf50 Gene

Pathways for C1orf50 Gene

SuperPathways for C1orf50 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1orf50 Gene

None

No data available for Pathways by source for C1orf50 Gene

Transcripts for C1orf50 Gene

mRNA/cDNA for C1orf50 Gene

Unigene Clusters for C1orf50 Gene

Chromosome 1 open reading frame 50:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf50 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c · 5d
SP1: -
SP2: - -
SP3: - - -
SP4:
SP5: -
SP6: - - -

Relevant External Links for C1orf50 Gene

GeneLoc Exon Structure for
C1orf50
ECgene alternative splicing isoforms for
C1orf50

Expression for C1orf50 Gene

mRNA expression in normal human tissues for C1orf50 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C1orf50 Gene

SOURCE GeneReport for Unigene cluster for C1orf50 Gene Hs.148845

genes like me logo Genes that share expressions with C1orf50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C1orf50 Gene

Orthologs for C1orf50 Gene

This gene was present in the common ancestor of animals.

Orthologs for C1orf50 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf50 35
  • 99.66 (n)
  • 99.5 (a)
C1H1ORF50 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C3H1orf50 35
  • 87.8 (n)
  • 86.6 (a)
C3H1ORF50 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C15H1orf50 35
  • 91.57 (n)
  • 89.41 (a)
C1orf50 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AU022252 35
  • 85.09 (n)
  • 84.42 (a)
AU022252 16
AU022252 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf50 36
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf50 36
  • 71 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1564804 35
  • 84.25 (n)
  • 81.91 (a)
chicken
(Gallus gallus)
Aves C1ORF50 35
  • 76.52 (n)
  • 81.06 (a)
C1orf50 36
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c1orf50 35
  • 68.41 (n)
  • 72.67 (a)
Str.11019 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4067 35
zebrafish
(Danio rerio)
Actinopterygii C11H1orf50 36
  • 66 (a)
OneToOne
zgc:112255 35
  • 68.8 (n)
  • 71.51 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008853 35
  • 56.29 (n)
  • 49.67 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG31800 35
  • 54.9 (n)
  • 48.74 (a)
CG31800 36
  • 36 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C08B11.9 35
  • 51.52 (n)
  • 41.26 (a)
C08B11.9 36
  • 35 (a)
OneToOne
Species with no ortholog for C1orf50:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C1orf50 Gene

ENSEMBL:
Gene Tree for C1orf50 (if available)
TreeFam:
Gene Tree for C1orf50 (if available)

Paralogs for C1orf50 Gene

Selected SIMAP similar genes for C1orf50 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with C1orf50: view

No data available for Paralogs for C1orf50 Gene

Variants for C1orf50 Gene

Sequence variations from dbSNP and Humsavar for C1orf50 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1801587 -- 42,775,249(+) TGCCT(A/G)CAAAC reference, missense, nc-transcript-variant
rs2760074 -- 42,771,951(+) gcctc(C/T)gtgac intron-variant
rs2760075 -- 42,773,724(+) TAATC(A/G)TTGTG intron-variant
rs4660232 -- 42,769,359(+) tgggc(A/G)acatg intron-variant
rs4660666 -- 42,769,351(+) gacca(A/G)cctgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf50 Gene

Variant ID Type Subtype PubMed ID
nsv829682 CNV Loss 17160897

Relevant External Links for C1orf50 Gene

HapMap Linkage Disequilibrium report
C1orf50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf50 Gene

Disorders for C1orf50 Gene

No disorders were found for C1orf50 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf50 Gene

Publications for C1orf50 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for C1orf50 Gene

Sources for C1orf50 Gene

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