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Aliases for C1orf27 Gene

Aliases for C1orf27 Gene

  • Chromosome 1 Open Reading Frame 27 2 3
  • Transactivated By Recombinant Transforming Growth Factor Beta 2 3
  • Transactivated By Transforming Growth Factor Beta Protein 1 3 4
  • LAG1-Interacting Protein 3 4
  • TTG1 3 4
  • ODR4 3 4
  • Odorant Response Abnormal 4 3
  • Protein Odr-4 Homolog 3
  • HODR-4 4
  • Odr-4 3
  • TTG1A 4

External Ids for C1orf27 Gene

Summaries for C1orf27 Gene

GeneCards Summary for C1orf27 Gene

C1orf27 (Chromosome 1 Open Reading Frame 27) is a Protein Coding gene. GO annotations related to this gene include oxidoreductase activity.

UniProtKB/Swiss-Prot for C1orf27 Gene

  • May play a role in the trafficking of a subset of G-protein coupled receptors.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf27 Gene

Genomics for C1orf27 Gene

Genomic Location for C1orf27 Gene

Start:
186,375,758 bp from pter
End:
186,421,378 bp from pter
Size:
45,621 bases
Orientation:
Plus strand

Genomic View for C1orf27 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf27 Gene

Regulatory Elements for C1orf27 Gene

Proteins for C1orf27 Gene

  • Protein details for C1orf27 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SWX8-ODR4_HUMAN
    Recommended name:
    Protein odr-4 homolog
    Protein Accession:
    Q5SWX8
    Secondary Accessions:
    • B4DNY0
    • E9PFR7
    • Q19CC6
    • Q8WYB6
    • Q9BTS2
    • Q9H6A6
    • Q9NX06

    Protein attributes for C1orf27 Gene

    Size:
    454 amino acids
    Molecular mass:
    51103 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15356.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for C1orf27 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf27 Gene

Proteomics data for C1orf27 Gene at MOPED

Post-translational modifications for C1orf27 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf27 Gene

No data available for DME Specific Peptides for C1orf27 Gene

Domains for C1orf27 Gene

Protein Domains for C1orf27 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

ODR4_HUMAN
Family:
  • Belongs to the ODR-4 family.:
    • Q5SWX8
genes like me logo Genes that share domains with C1orf27: view

No data available for Gene Families for C1orf27 Gene

Function for C1orf27 Gene

Molecular function for C1orf27 Gene

UniProtKB/Swiss-Prot Function: May play a role in the trafficking of a subset of G-protein coupled receptors.

Gene Ontology (GO) - Molecular Function for C1orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IEA --
GO:0016491 oxidoreductase activity IEA --
genes like me logo Genes that share ontologies with C1orf27: view

Phenotypes for C1orf27 Gene

genes like me logo Genes that share phenotypes with C1orf27: view

miRNA for C1orf27 Gene

miRTarBase miRNAs that target C1orf27

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C1orf27 Gene

Localization for C1orf27 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf27 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf27 Gene COMPARTMENTS Subcellular localization image for C1orf27 gene
Compartment Confidence
plasma membrane 3
cytosol 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C1orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1orf27: view

Pathways for C1orf27 Gene

SuperPathways for C1orf27 Gene

No Data Available

Interacting Proteins for C1orf27 Gene

STRING Interaction Network Preview (showing 4 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000287859%0d%0a9606.ENSP00000339007%0d%0a9606.ENSP00000264689%0d%0a9606.ENSP00000373413%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000287859 for C1orf27 Gene via STRING

Gene Ontology (GO) - Biological Process for C1orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with C1orf27: view

No data available for Pathways by source for C1orf27 Gene

Transcripts for C1orf27 Gene

Unigene Clusters for C1orf27 Gene

Chromosome 1 open reading frame 27:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf27 Gene

No ASD Table

Relevant External Links for C1orf27 Gene

GeneLoc Exon Structure for
C1orf27
ECgene alternative splicing isoforms for
C1orf27

Expression for C1orf27 Gene

mRNA expression in normal human tissues for C1orf27 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C1orf27 Gene

SOURCE GeneReport for Unigene cluster for C1orf27 Gene Hs.371210

mRNA Expression by UniProt/SwissProt for C1orf27 Gene

Q5SWX8-ODR4_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expressions with C1orf27: view

Orthologs for C1orf27 Gene

This gene was present in the common ancestor of animals.

Orthologs for C1orf27 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf27 36
  • 99.85 (n)
  • 99.56 (a)
C1orf27 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C16H1orf27 36
  • 90.82 (n)
  • 88.99 (a)
C1orf27 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1orf27 37
  • 88 (a)
OneToOne
C7H1orf27 36
  • 90.68 (n)
  • 88.55 (a)
mouse
(Mus musculus)
Mammalia BC003331 36
  • 87.84 (n)
  • 86.8 (a)
BC003331 16
BC003331 37
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf27 37
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf27 37
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307830 36
  • 87.4 (n)
  • 85.68 (a)
chicken
(Gallus gallus)
Aves C8H1ORF27 36
  • 69.88 (n)
  • 64.13 (a)
C8H1ORF27 37
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C1orf27 37
  • 62 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.10013 36
tropical clawed frog
(Silurana tropicalis)
Amphibia c1orf27 36
  • 59.55 (n)
  • 50.11 (a)
Str.15466 36
zebrafish
(Danio rerio)
Actinopterygii C2H1orf27 37
  • 45 (a)
OneToOne
zgc:63674 36
  • 53.71 (n)
  • 46.52 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006119 36
  • 41.76 (n)
  • 31.18 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10616 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 22 (a)
OneToOne
Species with no ortholog for C1orf27:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf27 Gene

ENSEMBL:
Gene Tree for C1orf27 (if available)
TreeFam:
Gene Tree for C1orf27 (if available)

Paralogs for C1orf27 Gene

No data available for Paralogs for C1orf27 Gene

Variants for C1orf27 Gene

Sequence variations from dbSNP and Humsavar for C1orf27 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs8824 -- 186,421,171(+) CACAA(A/C)TTCAG utr-variant-3-prime
rs958713 -- 186,382,463(-) TGTTT(C/T)TTGTT intron-variant
rs1003127 -- 186,389,456(-) AGATA(C/T)GCGTA intron-variant
rs1285177 -- 186,388,108(+) AATTA(A/C)ATTTT intron-variant
rs1285178 -- 186,388,162(+) AAAAA(G/T)GTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf27 Gene

Variant ID Type Subtype PubMed ID
nsv872589 CNV Loss 21882294

Relevant External Links for C1orf27 Gene

HapMap Linkage Disequilibrium report
C1orf27

Disorders for C1orf27 Gene

No disorders were found for C1orf27 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf27 Gene

Publications for C1orf27 Gene

  1. Protein expression, genomic structure, and polymorphisms of oculomedin. (PMID: 12868032) Fujiwara N. … Ohtsuki H. (Ophthalmic Genet. 2003) 2 3
  2. Ubiquitously expressed GPCR membrane-trafficking orthologs. (PMID: 15718105) Lehman C.W. … Komives C.F. (Genomics 2005) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. V(D)J recombinase binding and cleavage of cryptic recombination signal sequences identified from lymphoid malignancies. (PMID: 18187418) Zhang M. … Swanson P.C. (J. Biol. Chem. 2008) 3
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for C1orf27 Gene

Sources for C1orf27 Gene

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