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Aliases for C1orf233 Gene

Aliases for C1orf233 Gene

  • Chromosome 1 Open Reading Frame 233 2 3

External Ids for C1orf233 Gene

Previous GeneCards Identifiers for C1orf233 Gene

  • GC01M001537

Summaries for C1orf233 Gene

GeneCards Summary for C1orf233 Gene

C1orf233 (Chromosome 1 Open Reading Frame 233) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf233 Gene

Genomics for C1orf233 Gene

Genomic Location for C1orf233 Gene

Start:
1,598,008 bp from pter
End:
1,600,096 bp from pter
Size:
2,089 bases
Orientation:
Minus strand

Genomic View for C1orf233 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf233 Gene

No data available for Regulatory Elements for C1orf233 Gene

Proteins for C1orf233 Gene

  • Protein details for C1orf233 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F2Z333-CA233_HUMAN
    Recommended name:
    Fibronectin type-III domain-containing transmembrane protein C1orf233
    Protein Accession:
    F2Z333
    Secondary Accessions:

    Protein attributes for C1orf233 Gene

    Size:
    226 amino acids
    Molecular mass:
    24218 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf233 Gene

Proteomics data for C1orf233 Gene at MOPED

Post-translational modifications for C1orf233 Gene

  • Glycosylation at Asn86 and Asn109

Other Protein References for C1orf233 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf233 Gene

Domains for C1orf233 Gene

Protein Domains for C1orf233 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

F2Z333

UniProtKB/Swiss-Prot:

CA233_HUMAN :
  • F2Z333
Domain:
  • Contains 1 fibronectin type-III domain.
genes like me logo Genes that share domains with C1orf233: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for C1orf233 Gene

Function for C1orf233 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf233 Gene

Localization for C1orf233 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf233 Gene

Membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for C1orf233 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1orf233: view

No data available for Subcellular locations from COMPARTMENTS for C1orf233 Gene

Pathways for C1orf233 Gene

SuperPathways for C1orf233 Gene

No Data Available

Interacting Proteins for C1orf233 Gene

Gene Ontology (GO) - Biological Process for C1orf233 Gene

None

No data available for Pathways by source for C1orf233 Gene

Transcripts for C1orf233 Gene

mRNA/cDNA for C1orf233 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf233 Gene

Chromosome 1 open reading frame 233:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf233 Gene

No ASD Table

Relevant External Links for C1orf233 Gene

GeneLoc Exon Structure for
C1orf233
ECgene alternative splicing isoforms for
C1orf233

Expression for C1orf233 Gene

mRNA expression in normal human tissues for C1orf233 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf233 Gene

This gene is overexpressed in Adrenal Gland (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C1orf233 Gene

SOURCE GeneReport for Unigene cluster for C1orf233 Gene Hs.528816

genes like me logo Genes that share expressions with C1orf233: view

No data available for mRNA Expression by UniProt/SwissProt for C1orf233 Gene

Orthologs for C1orf233 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf233 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf233 35
  • 97.79 (n)
  • 96.94 (a)
C1orf233 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C16H1orf233 35
  • 88.78 (n)
  • 88.94 (a)
C1orf233 36
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1orf233 36
  • 89 (a)
OneToOne
C5H1orf233 35
  • 92 (n)
  • 88.5 (a)
mouse
(Mus musculus)
Mammalia B930041F14Rik 35
  • 86.63 (n)
  • 84.26 (a)
B930041F14Rik 16
B930041F14Rik 36
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC680656 35
  • 88.49 (n)
  • 86.8 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101733145 35
  • 60.85 (n)
  • 56.61 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC101885825 35
  • 60.75 (n)
  • 51.48 (a)
Species with no ortholog for C1orf233:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf233 Gene

ENSEMBL:
Gene Tree for C1orf233 (if available)
TreeFam:
Gene Tree for C1orf233 (if available)

Paralogs for C1orf233 Gene

No data available for Paralogs for C1orf233 Gene

Variants for C1orf233 Gene

Sequence variations from dbSNP and Humsavar for C1orf233 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs4075469 -- 1,601,796(-) CCCCA(G/T)ATACC upstream-variant-2KB
rs7554569 -- 1,602,057(-) CAGTC(A/G)CCCCC upstream-variant-2KB
rs11552172 -- 1,599,234(-) TCCTT(A/G)AGATC utr-variant-3-prime
rs28416941 -- 1,599,559(+) GCGCA(C/G)CGGCA reference, missense
rs28575725 -- 1,597,791(+) GCCCA(G/T)GACAA downstream-variant-500B

Relevant External Links for C1orf233 Gene

HapMap Linkage Disequilibrium report
C1orf233

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C1orf233 Gene

Disorders for C1orf233 Gene

No disorders were found for C1orf233 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf233 Gene

Publications for C1orf233 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for C1orf233 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C1orf233
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf233
    • Block miRNA regulation of C1orf233 using miScript Target Protectors

    Sources for C1orf233 Gene

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