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Aliases for C1orf228 Gene

Aliases for C1orf228 Gene

  • Chromosome 1 Open Reading Frame 228 2 3
  • NCRNA00082 3 4
  • P40 3 4
  • Uncharacterized Protein C1orf228 3
  • Non-Protein Coding RNA 82 2

External Ids for C1orf228 Gene

Previous HGNC Symbols for C1orf228 Gene

  • NCRNA00082

Previous GeneCards Identifiers for C1orf228 Gene

  • GC01P044938
  • GC01P045140
  • GC01P043255

Summaries for C1orf228 Gene

GeneCards Summary for C1orf228 Gene

C1orf228 (Chromosome 1 Open Reading Frame 228) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf228 Gene

Genomics for C1orf228 Gene

Regulatory Elements for C1orf228 Gene

Genomic Location for C1orf228 Gene

Start:
44,674,692 bp from pter
End:
44,725,591 bp from pter
Size:
50,900 bases
Orientation:
Plus strand

Genomic View for C1orf228 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf228 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf228 Gene

Proteins for C1orf228 Gene

  • Protein details for C1orf228 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PIY5-CA228_HUMAN
    Recommended name:
    Uncharacterized protein C1orf228
    Protein Accession:
    Q6PIY5
    Secondary Accessions:
    • A1KXE5

    Protein attributes for C1orf228 Gene

    Size:
    440 amino acids
    Molecular mass:
    48855 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf228 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf228 Gene

Proteomics data for C1orf228 Gene at MOPED

Post-translational modifications for C1orf228 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1orf228 Gene

Domains for C1orf228 Gene

Protein Domains for C1orf228 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf228 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf228: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf228 Gene

Function for C1orf228 Gene

Gene Ontology (GO) - Molecular Function for C1orf228 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
genes like me logo Genes that share ontologies with C1orf228: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf228 Gene

Localization for C1orf228 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf228 Gene COMPARTMENTS Subcellular localization image for C1orf228 gene
Compartment Confidence
cytosol 3
nucleus 2
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf228 Gene

Pathways for C1orf228 Gene

SuperPathways for C1orf228 Gene

No Data Available

Interacting Proteins for C1orf228 Gene

Gene Ontology (GO) - Biological Process for C1orf228 Gene

None

No data available for Pathways by source for C1orf228 Gene

Transcripts for C1orf228 Gene

Unigene Clusters for C1orf228 Gene

Chromosome 1 open reading frame 228:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf228 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13 ^ 14a · 14b
SP1: - - - -
SP2: - -
SP3: - -
SP4: -
SP5: - - - - - -
SP6: - -
SP7: - - - - - - - - -
SP8: - - - - - - - -
SP9: -
SP10:

Relevant External Links for C1orf228 Gene

GeneLoc Exon Structure for
C1orf228
ECgene alternative splicing isoforms for
C1orf228

Expression for C1orf228 Gene

mRNA expression in normal human tissues for C1orf228 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf228 Gene

This gene is overexpressed in Whole Blood (6.9) and Testis (4.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf228 Gene

SOURCE GeneReport for Unigene cluster for C1orf228 Gene Hs.173679

genes like me logo Genes that share expressions with C1orf228: view

No data available for mRNA Expression by UniProt/SwissProt for C1orf228 Gene

Orthologs for C1orf228 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf228 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf228 35
  • 99.39 (n)
  • 99.77 (a)
C1orf228 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C1orf228 36
  • 82 (a)
OneToOne
C3H1orf228 35
  • 86.74 (n)
  • 83.64 (a)
dog
(Canis familiaris)
Mammalia C15H1orf228 35
  • 86.36 (n)
  • 82.05 (a)
C1orf228 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm1661 35
  • 81.79 (n)
  • 78.47 (a)
Gm1661 16
Gm1661 36
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf228 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf228 36
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563714 35
  • 81.89 (n)
  • 77.73 (a)
chicken
(Gallus gallus)
Aves C1orf228 36
  • 56 (a)
OneToOne
C8H1orf228 35
  • 64.58 (n)
  • 59.65 (a)
lizard
(Anolis carolinensis)
Reptilia C1orf228 36
  • 62 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1749 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101733444 35
  • 61.06 (n)
  • 60.15 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8705 35
zebrafish
(Danio rerio)
Actinopterygii C8H1orf228 36
  • 56 (a)
OneToOne
Dr.14941 35
si:ch211-241d21.5 35
  • 60.92 (n)
  • 57.5 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11040 36
  • 53 (a)
OneToOne
Species with no ortholog for C1orf228:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf228 Gene

ENSEMBL:
Gene Tree for C1orf228 (if available)
TreeFam:
Gene Tree for C1orf228 (if available)

Paralogs for C1orf228 Gene

No data available for Paralogs for C1orf228 Gene

Variants for C1orf228 Gene

Sequence variations from dbSNP and Humsavar for C1orf228 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1080837 -- 44,684,578(-) ACTGG(C/G/T)TTCTT intron-variant, upstream-variant-2KB
rs1080838 -- 44,684,711(-) AGTGC(A/G)GGCAA intron-variant
rs1135319 -- 44,724,421(-) TGCTG(C/T)AGCTA intron-variant
rs1276067 -- 44,679,848(+) catct(A/G)ttttg intron-variant
rs1321702 -- 44,692,336(-) gcttc(C/T)tgaga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf228 Gene

Variant ID Type Subtype PubMed ID
esv2657051 CNV Deletion 23128226
esv2662778 CNV Deletion 23128226

Relevant External Links for C1orf228 Gene

HapMap Linkage Disequilibrium report
C1orf228

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf228 Gene

Disorders for C1orf228 Gene

No disorders were found for C1orf228 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf228 Gene

Publications for C1orf228 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C1orf228 Gene

Sources for C1orf228 Gene

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