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Aliases for C1orf220 Gene

Aliases for C1orf220 Gene

  • Chromosome 1 Open Reading Frame 220 2 3 5

External Ids for C1orf220 Gene

Previous GeneCards Identifiers for C1orf220 Gene

  • GC01P176780
  • GC01P178511
  • GC01P149739

Summaries for C1orf220 Gene

GeneCards Summary for C1orf220 Gene

C1orf220 (Chromosome 1 Open Reading Frame 220) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf220 Gene

Genomics for C1orf220 Gene

Regulatory Elements for C1orf220 Gene

Enhancers for C1orf220 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C1orf220 on UCSC Golden Path with GeneCards custom track

Promoters for C1orf220 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C1orf220 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf220 Gene

178,542,752 bp from pter
178,548,889 bp from pter
6,138 bases
Plus strand

Genomic View for C1orf220 Gene

Genes around C1orf220 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf220 Gene

Proteins for C1orf220 Gene

  • Protein details for C1orf220 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein C1orf220
    Protein Accession:
    Secondary Accessions:
    • B2RN72
    • Q8NAD3

    Protein attributes for C1orf220 Gene

    134 amino acids
    Molecular mass:
    15074 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf220 Gene

Proteomics data for C1orf220 Gene at MOPED

Post-translational modifications for C1orf220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1orf220 Gene

Domains & Families for C1orf220 Gene

Protein Domains for C1orf220 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf220: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf220 Gene

Function for C1orf220 Gene

Phenotypes for C1orf220 Gene

genes like me logo Genes that share phenotypes with C1orf220: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1orf220 Gene

Localization for C1orf220 Gene

Subcellular locations from

Jensen Localization Image for C1orf220 Gene COMPARTMENTS Subcellular localization image for C1orf220 gene
Compartment Confidence
mitochondrion 2
cytosol 1
extracellular 1
golgi apparatus 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf220 Gene

Pathways & Interactions for C1orf220 Gene

SuperPathways for C1orf220 Gene

No Data Available

Interacting Proteins for C1orf220 Gene

Gene Ontology (GO) - Biological Process for C1orf220 Gene


No data available for Pathways by source and SIGNOR curated interactions for C1orf220 Gene

Drugs & Compounds for C1orf220 Gene

No Compound Related Data Available

Transcripts for C1orf220 Gene

mRNA/cDNA for C1orf220 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(34) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf220 Gene

Chromosome 1 open reading frame 220:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf220 Gene

No ASD Table

Relevant External Links for C1orf220 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C1orf220 Gene

mRNA expression in normal human tissues for C1orf220 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C1orf220 Gene

SOURCE GeneReport for Unigene cluster for C1orf220 Gene Hs.668085

genes like me logo Genes that share expression patterns with C1orf220: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C1orf220 Gene

Orthologs for C1orf220 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1orf220 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1orf220 36
  • 98 (a)
Species with no ortholog for C1orf220:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf220 Gene

Gene Tree for C1orf220 (if available)
Gene Tree for C1orf220 (if available)

Paralogs for C1orf220 Gene

No data available for Paralogs for C1orf220 Gene

Variants for C1orf220 Gene

Sequence variations from dbSNP and Humsavar for C1orf220 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs12568310 - 178,545,487(+) GATCC(C/T)TGTGA nc-transcript-variant
rs4076563 -- 178,547,766(+) cgaga(C/T)tctgt nc-transcript-variant
rs4233175 -- 178,548,456(+) GGCCC(A/G)TTCAA nc-transcript-variant
rs4600009 -- 178,549,269(+) CATGC(A/G)CCTGT downstream-variant-500B
rs4650992 -- 178,546,000(+) CTAAG(A/T)CCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf220 Gene

Variant ID Type Subtype PubMed ID
nsv527862 CNV Loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for C1orf220 Gene

Disorders for C1orf220 Gene

Relevant External Links for C1orf220

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C1orf220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf220 Gene

Publications for C1orf220 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C1orf220 Gene

Sources for C1orf220 Gene