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Aliases for C1orf210 Gene

Aliases for C1orf210 Gene

  • Chromosome 1 Open Reading Frame 210 2 3
  • TEMP 3 4
  • Type III Endosome Membrane Protein TEMP 3

External Ids for C1orf210 Gene

Summaries for C1orf210 Gene

GeneCards Summary for C1orf210 Gene

C1orf210 (Chromosome 1 Open Reading Frame 210) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C1orf210 Gene

  • May be involved in membrane trafficking between endosomes and plasma membrane

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf210 Gene

Genomics for C1orf210 Gene

Genomic Location for C1orf210 Gene

Start:
43,281,883 bp from pter
End:
43,285,617 bp from pter
Size:
3,735 bases
Orientation:
Minus strand

Genomic View for C1orf210 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf210 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf210 Gene

Regulatory Elements for C1orf210 Gene

Proteins for C1orf210 Gene

  • Protein details for C1orf210 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVY1-CA210_HUMAN
    Recommended name:
    Type III endosome membrane protein TEMP
    Protein Accession:
    Q8IVY1
    Secondary Accessions:
    • D3DPX2

    Protein attributes for C1orf210 Gene

    Size:
    113 amino acids
    Molecular mass:
    12024 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf210 Gene

Proteomics data for C1orf210 Gene at MOPED

Post-translational modifications for C1orf210 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn5

Other Protein References for C1orf210 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf210 Gene

Domains for C1orf210 Gene

Protein Domains for C1orf210 Gene

ProtoNet:
genes like me logo Genes that share domains with C1orf210: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf210 Gene

Function for C1orf210 Gene

Molecular function for C1orf210 Gene

UniProtKB/Swiss-Prot Function: May be involved in membrane trafficking between endosomes and plasma membrane

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf210 Gene

Localization for C1orf210 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf210 Gene

Membrane; Single-pass type III membrane protein. Early endosome. Recycling endosome. Cell membrane. Note=Also localizes to tubular endosome structures. {ECO:0000250 UniProtKB:Q9CQM1}.

Gene Ontology (GO) - Cellular Components for C1orf210 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005769 early endosome IEA --
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0055037 recycling endosome IEA --
genes like me logo Genes that share ontologies with C1orf210: view

Pathways for C1orf210 Gene

SuperPathways for C1orf210 Gene

No Data Available

Interacting Proteins for C1orf210 Gene

Gene Ontology (GO) - Biological Process for C1orf210 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002230 positive regulation of defense response to virus by host IMP 22020285
genes like me logo Genes that share ontologies with C1orf210: view

No data available for Pathways by source for C1orf210 Gene

Transcripts for C1orf210 Gene

mRNA/cDNA for C1orf210 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(20) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf210 Gene

Chromosome 1 open reading frame 210:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf210 Gene

No ASD Table

Relevant External Links for C1orf210 Gene

GeneLoc Exon Structure for
C1orf210
ECgene alternative splicing isoforms for
C1orf210

Expression for C1orf210 Gene

mRNA expression in normal human tissues for C1orf210 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf210 Gene

This gene is overexpressed in Colon - Transverse (7.8), Kidney - Cortex (5.0), Pancreas (4.7), and Stomach (4.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf210 Gene

SOURCE GeneReport for Unigene cluster for C1orf210 Gene Hs.158963

genes like me logo Genes that share expressions with C1orf210: view

Orthologs for C1orf210 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf210 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf210 36
  • 99.71 (n)
  • 100 (a)
C1orf210 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C3H1orf210 36
  • 81.12 (n)
  • 72.57 (a)
C3H1ORF210 37
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C15H1orf210 36
  • 80.56 (n)
  • 73.15 (a)
C1orf210 37
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2610528J11Rik 36
  • 80.06 (n)
  • 77.57 (a)
2610528J11Rik 16
2610528J11Rik 37
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf210 37
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1305347 36
  • 80.67 (n)
  • 78 (a)
zebrafish
(Danio rerio)
Actinopterygii C6H1orf210 37
  • 15 (a)
OneToOne
Species with no ortholog for C1orf210:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf210 Gene

ENSEMBL:
Gene Tree for C1orf210 (if available)
TreeFam:
Gene Tree for C1orf210 (if available)

Paralogs for C1orf210 Gene

No data available for Paralogs for C1orf210 Gene

Variants for C1orf210 Gene

Sequence variations from dbSNP and Humsavar for C1orf210 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1198976 -- 43,282,461(+) GAATA(A/G)CATTG utr-variant-3-prime, downstream-variant-500B
rs1763696 -- 43,282,380(-) TCTTC(C/T)CCTAA utr-variant-3-prime, downstream-variant-500B
rs2784466 -- 43,286,306(-) GATAA(C/T)GAGGA upstream-variant-2KB
rs2991342 -- 43,285,169(+) TACTA(C/G)GTCCG intron-variant, upstream-variant-2KB
rs3120123 -- 43,284,084(+) CTGAA(G/T)CAGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf210 Gene

Variant ID Type Subtype PubMed ID
nsv829693 CNV Loss 17160897

Relevant External Links for C1orf210 Gene

HapMap Linkage Disequilibrium report
C1orf210

Disorders for C1orf210 Gene

No disorders were found for C1orf210 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf210 Gene

Publications for C1orf210 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3

Products for C1orf210 Gene

Sources for C1orf210 Gene

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