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Aliases for C1orf204 Gene

Aliases for C1orf204 Gene

  • Chromosome 1 Open Reading Frame 204 2 3
  • VSIG8 4

External Ids for C1orf204 Gene

Previous GeneCards Identifiers for C1orf204 Gene

  • GC01U901196
  • GC01M158071
  • GC01M131160

Summaries for C1orf204 Gene

GeneCards Summary for C1orf204 Gene

C1orf204 (Chromosome 1 Open Reading Frame 204) is a Protein Coding gene. An important paralog of this gene is VSIG8.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf204 Gene

Genomics for C1orf204 Gene

Regulatory Elements for C1orf204 Gene

Genomic Location for C1orf204 Gene

Start:
159,834,474 bp from pter
End:
159,855,347 bp from pter
Size:
20,874 bases
Orientation:
Minus strand

Genomic View for C1orf204 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf204 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf204 Gene

Proteins for C1orf204 Gene

  • Protein details for C1orf204 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VU13-VSIG8_HUMAN
    Recommended name:
    V-set and immunoglobulin domain-containing protein 8
    Protein Accession:
    Q5VU13
    Secondary Accessions:
    • Q5VU14

    Protein attributes for C1orf204 Gene

    Size:
    414 amino acids
    Molecular mass:
    43891 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AK096506; Type=Erroneous termination; Positions=409; Note=Translated as Lys.; Evidence={ECO:0000305};

    Alternative splice isoforms for C1orf204 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf204 Gene

Proteomics data for C1orf204 Gene at MOPED

Post-translational modifications for C1orf204 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf204 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf204 Gene

Domains for C1orf204 Gene

Protein Domains for C1orf204 Gene

Graphical View of Domain Structure for InterPro Entry

Q5VU13

UniProtKB/Swiss-Prot:

VSIG8_HUMAN :
  • Q5VU13
Domain:
  • Contains 2 Ig-like V-type (immunoglobulin-like) domains.
genes like me logo Genes that share domains with C1orf204: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for C1orf204 Gene

Function for C1orf204 Gene

Gene Ontology (GO) - Molecular Function for C1orf204 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding --
genes like me logo Genes that share ontologies with C1orf204: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf204 Gene

Localization for C1orf204 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf204 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf204 Gene COMPARTMENTS Subcellular localization image for C1orf204 gene
Compartment Confidence
mitochondrion 3
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for C1orf204 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with C1orf204: view

Pathways for C1orf204 Gene

SuperPathways for C1orf204 Gene

No Data Available

Interacting Proteins for C1orf204 Gene

Selected Interacting proteins: Q5VU13-VSIG8_HUMAN for C1orf204 Gene via I2D

Symbol External ID(s) Details
USP15
--
  • Q6FG91 21

Gene Ontology (GO) - Biological Process for C1orf204 Gene

None

No data available for Pathways by source for C1orf204 Gene

Transcripts for C1orf204 Gene

mRNA/cDNA for C1orf204 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf204 Gene

No ASD Table

Relevant External Links for C1orf204 Gene

GeneLoc Exon Structure for
C1orf204
ECgene alternative splicing isoforms for
C1orf204

Expression for C1orf204 Gene

mRNA expression in normal human tissues for C1orf204 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf204 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf204 Gene

genes like me logo Genes that share expressions with C1orf204: view

No data available for mRNA Expression by UniProt/SwissProt for C1orf204 Gene

Orthologs for C1orf204 Gene

Evolution for C1orf204 Gene

ENSEMBL:
Gene Tree for C1orf204 (if available)
TreeFam:
Gene Tree for C1orf204 (if available)

No data available for Orthologs for C1orf204 Gene

Paralogs for C1orf204 Gene

Paralogs for C1orf204 Gene

genes like me logo Genes that share paralogs with C1orf204: view

Variants for C1orf204 Gene

Sequence variations from dbSNP and Humsavar for C1orf204 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2494491 -- 159,838,179(+) TTTTT(A/T)AAAAA intron-variant
rs2494492 -- 159,839,478(+) AGAAC(A/T)TCTTG intron-variant
rs2494493 -- 159,840,450(+) CTTCG(A/C)TGCTC intron-variant
rs2494494 -- 159,841,952(+) gtggg(A/G)agagg intron-variant
rs2494496 -- 159,851,891(+) AGTAG(C/G)ATTTT intron-variant

Relevant External Links for C1orf204 Gene

HapMap Linkage Disequilibrium report
C1orf204

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C1orf204 Gene

Disorders for C1orf204 Gene

Relevant External Links for C1orf204

Genetic Association Database (GAD)
C1orf204
genes like me logo Genes that share disorders with C1orf204: view

No data available for UniProtKB/Swiss-Prot for C1orf204 Gene

Publications for C1orf204 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4
  4. A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. (PMID: 17463248) Scott L.J. … Boehnke M. (Science 2007) 48

Products for C1orf204 Gene

Sources for C1orf204 Gene

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