Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1orf198 Gene

Aliases for C1orf198 Gene

  • Chromosome 1 Open Reading Frame 198 2 3 5

External Ids for C1orf198 Gene

Previous GeneCards Identifiers for C1orf198 Gene

  • GC01M229039
  • GC01M230972
  • GC01M201457

Summaries for C1orf198 Gene

GeneCards Summary for C1orf198 Gene

C1orf198 (Chromosome 1 Open Reading Frame 198) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf198 Gene

Genomics for C1orf198 Gene

Regulatory Elements for C1orf198 Gene

Enhancers for C1orf198 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C1orf198 on UCSC Golden Path with GeneCards custom track

Promoters for C1orf198 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C1orf198 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf198 Gene

Chromosome:
1
Start:
230,837,119 bp from pter
End:
230,869,589 bp from pter
Size:
32,471 bases
Orientation:
Minus strand

Genomic View for C1orf198 Gene

Genes around C1orf198 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf198 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf198 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf198 Gene

Proteins for C1orf198 Gene

  • Protein details for C1orf198 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H425-CA198_HUMAN
    Recommended name:
    Uncharacterized protein C1orf198
    Protein Accession:
    Q9H425
    Secondary Accessions:
    • A8K8R8
    • B3KTW1
    • G5EA08

    Protein attributes for C1orf198 Gene

    Size:
    327 amino acids
    Molecular mass:
    36346 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf198 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf198 Gene

Proteomics data for C1orf198 Gene at MOPED

Post-translational modifications for C1orf198 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf198 Gene

No data available for DME Specific Peptides for C1orf198 Gene

Domains & Families for C1orf198 Gene

Protein Domains for C1orf198 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf198 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf198: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf198 Gene

Function for C1orf198 Gene

genes like me logo Genes that share phenotypes with C1orf198: view

Animal Models for C1orf198 Gene

MGI Knock Outs for C1orf198:

Animal Model Products

CRISPR Products

miRNA for C1orf198 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for C1orf198 Gene

Localization for C1orf198 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf198 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf198 Gene COMPARTMENTS Subcellular localization image for C1orf198 gene
Compartment Confidence
cytosol 3
mitochondrion 2
extracellular 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for C1orf198 Gene

Pathways & Interactions for C1orf198 Gene

SuperPathways for C1orf198 Gene

No Data Available

Interacting Proteins for C1orf198 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000355623%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000385269%0d%0a
Selected Interacting proteins: ENSP00000355623 for C1orf198 Gene via STRING

Gene Ontology (GO) - Biological Process for C1orf198 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf198 Gene

Drugs & Compounds for C1orf198 Gene

No Compound Related Data Available

Transcripts for C1orf198 Gene

Unigene Clusters for C1orf198 Gene

Chromosome 1 open reading frame 198:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf198 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d · 7e ^ 8
SP1: - - - - - -
SP2: - - - - - - - - -
SP3: - - - - -
SP4: - -
SP5:
SP6:
SP7: -

Relevant External Links for C1orf198 Gene

GeneLoc Exon Structure for
C1orf198
ECgene alternative splicing isoforms for
C1orf198

Expression for C1orf198 Gene

mRNA expression in normal human tissues for C1orf198 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C1orf198 Gene

This gene is overexpressed in Bone marrow stromal cell (25.3), Adrenal (7.9), Peripheral blood mononuclear cells (7.8), and Gallbladder (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C1orf198 Gene



SOURCE GeneReport for Unigene cluster for C1orf198 Gene Hs.520494

genes like me logo Genes that share expression patterns with C1orf198: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C1orf198 Gene

Orthologs for C1orf198 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf198 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C28H1orf198 35
  • 85.15 (n)
  • 82.69 (a)
C1orf198 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C4H1orf198 35
  • 86.97 (n)
  • 84.62 (a)
C1orf198 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2310022B05Rik 35
  • 80.35 (n)
  • 78.83 (a)
2310022B05Rik 16
2310022B05Rik 36
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1559896 35
  • 79.63 (n)
  • 78.43 (a)
oppossum
(Monodelphis domestica)
Mammalia C1orf198 36
  • 63 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C1orf198 36
  • 97 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1orf198 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485462 35
  • 59.91 (n)
  • 51.13 (a)
zebrafish
(Danio rerio)
Actinopterygii wu:fa18f11 35
  • 57.13 (n)
  • 50.72 (a)
C20H1orf198 36
  • 41 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 22 (a)
OneToOne
Species with no ortholog for C1orf198:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf198 Gene

ENSEMBL:
Gene Tree for C1orf198 (if available)
TreeFam:
Gene Tree for C1orf198 (if available)

Paralogs for C1orf198 Gene

No data available for Paralogs for C1orf198 Gene

Variants for C1orf198 Gene

Sequence variations from dbSNP and Humsavar for C1orf198 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs34864456 - 230,843,461(+) CAGTG(A/C)ACTGC reference, missense
rs35115679 - 230,843,364(+) CAAAC(C/T)TGGGT reference, missense
rs12699 -- 230,837,661(+) ACACA(G/T)GAGCC utr-variant-3-prime
rs748080 -- 230,850,205(+) CTAAC(A/G)GTAAC intron-variant
rs1010189 -- 230,838,515(+) CATTT(A/T)AAAAA utr-variant-3-prime

Variation tolerance for C1orf198 Gene

Residual Variation Intolerance Score: 68.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.00; 20.51% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for C1orf198 Gene

Disorders for C1orf198 Gene

Relevant External Links for C1orf198

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1orf198

No disorders were found for C1orf198 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf198 Gene

Publications for C1orf198 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3
  5. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) KA+rlA+ K. … GAPrlich D. (Elife 2015) 3

Products for C1orf198 Gene

Sources for C1orf198 Gene

Content