Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1orf177 Gene

Aliases for C1orf177 Gene

  • Chromosome 1 Open Reading Frame 177 2 3

External Ids for C1orf177 Gene

Summaries for C1orf177 Gene

GeneCards Summary for C1orf177 Gene

C1orf177 (Chromosome 1 Open Reading Frame 177) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf177 Gene

Genomics for C1orf177 Gene

Genomic Location for C1orf177 Gene

Start:
54,806,063 bp from pter
End:
54,842,264 bp from pter
Size:
36,202 bases
Orientation:
Plus strand

Genomic View for C1orf177 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf177 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf177 Gene

Regulatory Elements for C1orf177 Gene

Proteins for C1orf177 Gene

  • Protein details for C1orf177 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3ZCV2-CA177_HUMAN
    Recommended name:
    Uncharacterized protein C1orf177
    Protein Accession:
    Q3ZCV2
    Secondary Accessions:
    • B7WPL2
    • Q8N7Y9

    Protein attributes for C1orf177 Gene

    Size:
    418 amino acids
    Molecular mass:
    47609 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf177 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf177 Gene

Proteomics data for C1orf177 Gene at MOPED

Post-translational modifications for C1orf177 Gene

No Post-translational modifications

Other Protein References for C1orf177 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf177 Gene

Domains for C1orf177 Gene

Protein Domains for C1orf177 Gene

ProtoNet:
genes like me logo Genes that share domains with C1orf177: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf177 Gene

Function for C1orf177 Gene

Phenotypes for C1orf177 Gene

GenomeRNAi human phenotypes for C1orf177:
genes like me logo Genes that share phenotypes with C1orf177: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf177 Gene

Localization for C1orf177 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf177 Gene COMPARTMENTS Subcellular localization image for C1orf177 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for C1orf177 Gene

Pathways for C1orf177 Gene

SuperPathways for C1orf177 Gene

No Data Available

Interacting Proteins for C1orf177 Gene

Gene Ontology (GO) - Biological Process for C1orf177 Gene

None

No data available for Pathways by source for C1orf177 Gene

Transcripts for C1orf177 Gene

mRNA/cDNA for C1orf177 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf177 Gene

Chromosome 1 open reading frame 177:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf177 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1:
SP2: -

Relevant External Links for C1orf177 Gene

GeneLoc Exon Structure for
C1orf177
ECgene alternative splicing isoforms for
C1orf177

Expression for C1orf177 Gene

mRNA expression in normal human tissues for C1orf177 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf177 Gene

This gene is overexpressed in Esophagus - Mucosa (22.0), Testis (7.9), and Vagina (6.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf177 Gene

SOURCE GeneReport for Unigene cluster for C1orf177 Gene Hs.376018

genes like me logo Genes that share expressions with C1orf177: view

Orthologs for C1orf177 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf177 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf177 36
  • 98.88 (n)
  • 98.56 (a)
C1orf177 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C1orf177 37
  • 77 (a)
OneToOne
C3H1orf177 36
  • 83.8 (n)
  • 79.85 (a)
dog
(Canis familiaris)
Mammalia C1orf177 37
  • 81 (a)
OneToOne
C5H1orf177 36
  • 85.51 (n)
  • 81.66 (a)
mouse
(Mus musculus)
Mammalia BC055111 36
  • 78.94 (n)
  • 72.14 (a)
BC055111 16
BC055111 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf177 37
  • 45 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1559493 36
  • 78.64 (n)
  • 73.57 (a)
chicken
(Gallus gallus)
Aves C1orf177 37
  • 42 (a)
OneToOne
C8H1ORF177 36
  • 54.19 (n)
  • 44.03 (a)
lizard
(Anolis carolinensis)
Reptilia C1orf177 37
  • 46 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100491026 36
  • 51.91 (n)
  • 44.81 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 37 (a)
OneToMany
-- 37
  • 31 (a)
OneToMany
Species with no ortholog for C1orf177:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf177 Gene

ENSEMBL:
Gene Tree for C1orf177 (if available)
TreeFam:
Gene Tree for C1orf177 (if available)

Paralogs for C1orf177 Gene

No data available for Paralogs for C1orf177 Gene

Variants for C1orf177 Gene

Sequence variations from dbSNP and Humsavar for C1orf177 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs141014 -- 54,833,466(-) TAGCC(A/G)CACAT intron-variant
rs583994 -- 54,809,234(-) agctt(G/T)cccac intron-variant
rs584085 -- 54,809,161(-) GAGTG(A/G)TTGCA intron-variant
rs585552 -- 54,819,533(-) aaaaa(A/G)tagcc intron-variant
rs585802 -- 54,808,791(-) CCTCG(G/T)GCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf177 Gene

Variant ID Type Subtype PubMed ID
nsv461561 CNV Gain 19166990
nsv817614 CNV Gain 22305530
dgv229n71 CNV Gain 21882294
nsv871008 CNV Loss 21882294
dgv53e1 CNV Complex 17122850
nsv160901 CNV Insertion 16902084
esv1945281 CNV Deletion 18987734
esv3026 CNV Deletion 18987735
esv2748352 CNV Deletion 23290073
esv2657155 CNV Deletion 23128226
esv1224986 CNV Deletion 17803354
esv6692 CNV Loss 19470904
nsv829915 CNV Gain 17160897
essv12120 CNV CNV 17122850
dgv54e1 CNV Complex 17122850
nsv10173 CNV Loss 18304495
esv2675514 CNV Deletion 23128226
esv23914 CNV Loss 19812545
esv2748364 CNV Deletion 23290073
nsv514928 CNV Complex 21397061
esv2421957 CNV Duplication 20811451
nsv441694 CNV CNV 18776908

Relevant External Links for C1orf177 Gene

HapMap Linkage Disequilibrium report
C1orf177

Disorders for C1orf177 Gene

Relevant External Links for C1orf177

Human Genome Epidemiology (HuGE) Navigator
C1orf177
genes like me logo Genes that share disorders with C1orf177: view

No data available for UniProtKB/Swiss-Prot for C1orf177 Gene

Publications for C1orf177 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C1orf177 Gene

Sources for C1orf177 Gene

Back to Top

Content