C1orf167 Gene
protein-coding GIFtS: 32
GCID: GC01P011821 (predicted)
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chromosome 1 open reading frame 167
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Aliases
for C1orf167 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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| Aliases |
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| Chromosome 1 Open Reading Frame 1671 2 | | DKFZp434E14101 | | RP11-56N19.21 | | Uncharacterized Protein C1orf1672 |
Export aliases for C1orf167 gene to outside databasesPrevious GC identifers: GC01P011757 GC01P011744 GC01P011755 GC01P010981 |
Summaries
for C1orf167 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for C1orf167 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NT_021937.19 NC_018912.1
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C1orf167 gene promoter:
NRSF form 1 Bach2 Pax-2 Pax-2a NRSF form 2 GATA-1 YY1 Arnt MZF-1 HEN1
Other transcription factors
Search SABiosciences Chromatin IP Primers for C1orf167
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1orf167 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1p36.22 Ensembl cytogenetic band: 1p36.22 HGNC cytogenetic band: 1p36.22C1orf167 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P011821: view genomic region
(about GC identifiers)
Start:
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11,821,844 bp from pter |
End:
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11,849,642 bp from pter |
Size:
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27,799 bases |
Orientation:
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plus strand |
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Proteins
for C1orf167 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CA167_HUMAN, Q5SNV9 (See
protein sequence)Recommended Name: Uncharacterized protein C1orf167 Size: 1468 amino acids; 162423 Da
Sequence caution: Sequence=CAI15881.1; Type=Erroneous gene model prediction;
Secondary accessions: Q8NDA9 Q8NDF3Alternative splicing: 2 isoforms: Q5SNV9-1 Q5SNV9-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for C1orf167: NX_Q5SNV9
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5SNV9
C1orf167 Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000317749 ENSP00000398213 ENSP00000399272 ENSP00000414909 ENSP00000388259
Human Recombinant Protein Products for C1orf167:
C1orf167 Antibody Products:
Assay Products for C1orf167: |
Protein
Domains /
Families
for C1orf167 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q5SNV9 |
Function
for C1orf167 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Animal Models:
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1orf167 |
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Pathways & Interactions
for C1orf167 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1orf167
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Drugs & Compounds
for C1orf167 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for C1orf167
Search CenterWatch for drugs/clinical trials and news about C1orf167 / CA167 
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Transcripts
for C1orf167 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Clusters for C1orf167: Chromosome 1 open reading frame 167 Hs.585415 [show with all ESTs], Hs.730573 [show with all ESTs]Unigene Representative Sequences: AL834308, BC1280928 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000484153 ENST00000312793(uc001ata.3) ENST00000444493 ENST00000449278
ENST00000475041 ENST00000482358 ENST00000433342(uc001asy.1 uc001asz.3)
ENST00000435090
Additional cDNA sequence: BC128091.1 BC128092.1 8 DOTS entries: DT.100745708 DT.40305574 DT.121333517 DT.97824516 DT.87046276 DT.99948025 DT.40285938 DT.121440354 15 AceView cDNA sequences: BM920101 BX118390 CD557411 AL834308 AF398935 BI827615 AL833926 AL833920 BC031692 BI837287 AI291308 AI658585 BE787903 AI808467 AA582865
GeneLoc Exon Structure
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Expression
for C1orf167 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C1orf167 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACCAGTGGGT
About this image
See C1orf167 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C1orf167
SOURCE GeneReport for Unigene clusters: Hs.585415 Hs.730573
SABiosciences Custom PCR Arrays for C1orf167
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat C1orf167 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C1orf167 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1orf167 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1orf167 |
Orthologs
for C1orf167 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for C1orf167 (if available)
TreeFam Gene Tree for C1orf167 (if available) |
Paralogs
for C1orf167 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for C1orf167 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for C1orf167 (11821844 - 11849642 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for C1orf167: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for C1orf167 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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 C1orf167 for disorders About MalaCards
C1orf167 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: C1orf167 (6 documents)
Export disorders for C1orf167 gene to outside databases
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Publications
for C1orf167 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for C1orf167 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C1orf167) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Multiple transcription start sites and alternative splicing in the methylenetetrahydrofolate reductase gene result in two enzyme isoforms. (PubMed id 12370778)1, 3 Tran P.... Rozen R. (2002)
- Identification of type 2 diabetes-associated combinat ion of SNPs using support vector machine. (PubMed id 20416077)1 Ban H.J....Park K.J. (2010)
- Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
- Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
- Candidate gene polymorphisms for ischemic stroke. (PubMed id 19729601)1 Matarin M....Meschia J.F. (2009)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for C1orf167 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing C1orf167 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing C1orf167 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C1orf167 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for C1orf167 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for C1orf167 gene:
Search GeneIP for patents involving C1orf167
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for C1orf167 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C1orf167 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C1orf167 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1orf167 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat C1orf167 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1orf167 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C1orf167 |
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 | | | C1orf167 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1orf167 |
|  |  |  |  | | | | Search ThermoFisher Antibodies for C1orf167 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat C1orf167 |
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