Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1orf162 Gene

Aliases for C1orf162 Gene

  • Chromosome 1 Open Reading Frame 162 2 3

External Ids for C1orf162 Gene

Previous GeneCards Identifiers for C1orf162 Gene

  • GC01P111729
  • GC01P111818
  • GC01P112016
  • GC01P109888

Summaries for C1orf162 Gene

GeneCards Summary for C1orf162 Gene

C1orf162 (Chromosome 1 Open Reading Frame 162) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf162 Gene

Genomics for C1orf162 Gene

Regulatory Elements for C1orf162 Gene

Genomic Location for C1orf162 Gene

111,473,792 bp from pter
111,478,512 bp from pter
4,721 bases
Plus strand

Genomic View for C1orf162 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf162 Gene

Proteins for C1orf162 Gene

  • Protein details for C1orf162 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Transmembrane protein C1orf162
    Protein Accession:
    Secondary Accessions:
    • Q5QNZ1

    Protein attributes for C1orf162 Gene

    155 amino acids
    Molecular mass:
    16886 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf162 Gene


neXtProt entry for C1orf162 Gene

Proteomics data for C1orf162 Gene at MOPED

Post-translational modifications for C1orf162 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf162 Gene

No data available for DME Specific Peptides for C1orf162 Gene

Domains for C1orf162 Gene

Protein Domains for C1orf162 Gene


Suggested Antigen Peptide Sequences for C1orf162 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf162: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf162 Gene

Function for C1orf162 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf162

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1orf162 Gene

Localization for C1orf162 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf162 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

Jensen Localization Image for C1orf162 Gene COMPARTMENTS Subcellular localization image for C1orf162 gene
Compartment Confidence
plasma membrane 2
cytosol 1
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C1orf162 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1orf162: view

Pathways for C1orf162 Gene

SuperPathways for C1orf162 Gene

No Data Available

Interacting Proteins for C1orf162 Gene

Gene Ontology (GO) - Biological Process for C1orf162 Gene


No data available for Pathways by source for C1orf162 Gene

Transcripts for C1orf162 Gene

Unigene Clusters for C1orf162 Gene

Chromosome 1 open reading frame 162:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf162

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf162 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c
SP1: - - -
SP2: - -
SP3: - - -

Relevant External Links for C1orf162 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C1orf162 Gene

mRNA expression in normal human tissues for C1orf162 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf162 Gene

This gene is overexpressed in Whole Blood (26.8).

Protein differential expression in normal tissues for C1orf162 Gene

This gene is overexpressed in NK cells (30.6), Platelet (19.8), and Blymphocyte (18.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1orf162 Gene

SOURCE GeneReport for Unigene cluster for C1orf162 Gene Hs.288010

genes like me logo Genes that share expressions with C1orf162: view

Expression partners for C1orf162 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for C1orf162 Gene

Orthologs for C1orf162 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C1orf162 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C3H1orf162 35
  • 75.38 (n)
  • 55.38 (a)
(Canis familiaris)
Mammalia C17H1orf162 35
  • 66.17 (n)
  • 54.89 (a)
C1ORF162 36
  • 39 (a)
(Mus musculus)
Mammalia I830077J02Rik 35
  • 73.81 (n)
  • 58.73 (a)
I830077J02Rik 16
I830077J02Rik 36
  • 52 (a)
(Pan troglodytes)
Mammalia C1H1orf162 35
  • 99.57 (n)
  • 100 (a)
C1H1orf162 36
  • 100 (a)
(Rattus norvegicus)
Mammalia LOC100911379 35
  • 73.6 (n)
  • 62.4 (a)
Species with no ortholog for C1orf162:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf162 Gene

Gene Tree for C1orf162 (if available)
Gene Tree for C1orf162 (if available)

Paralogs for C1orf162 Gene

No data available for Paralogs for C1orf162 Gene

Variants for C1orf162 Gene

Sequence variations from dbSNP and Humsavar for C1orf162 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1054680 -- 111,478,407(+) GGTAC(A/G)GAGCT utr-variant-3-prime
rs1419091 -- 111,477,625(-) GGGAG(C/G)AGGTG intron-variant
rs2211494 -- 111,477,616(+) ACCTG(A/C)CAACA intron-variant
rs2298189 -- 111,477,601(+) CCCTG(A/C)CCCCC intron-variant
rs2800885 -- 111,473,239(+) GGATC(C/T)TAACA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C1orf162 Gene

Variant ID Type Subtype PubMed ID
nsv463250 CNV Loss 19166990

Relevant External Links for C1orf162 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf162 Gene

Disorders for C1orf162 Gene

Relevant External Links for C1orf162

Genetic Association Database (GAD)

No disorders were found for C1orf162 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C1orf162 Gene

Publications for C1orf162 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose. (PMID: 19875614) Paterson A.D. … Bull S.B. (Diabetes 2010) 48
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for C1orf162 Gene

Sources for C1orf162 Gene

Back to Top