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Aliases for C1orf159 Gene

Aliases for C1orf159 Gene

  • Chromosome 1 Open Reading Frame 159 2 3

External Ids for C1orf159 Gene

Summaries for C1orf159 Gene

GeneCards Summary for C1orf159 Gene

C1orf159 (Chromosome 1 Open Reading Frame 159) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf159 Gene

Genomics for C1orf159 Gene

Genomic Location for C1orf159 Gene

Start:
1,081,818 bp from pter
End:
1,116,361 bp from pter
Size:
34,544 bases
Orientation:
Minus strand

Genomic View for C1orf159 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf159 Gene

Regulatory Elements for C1orf159 Gene

Proteins for C1orf159 Gene

  • Protein details for C1orf159 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HA4-CA159_HUMAN
    Recommended name:
    Uncharacterized protein C1orf159
    Protein Accession:
    Q96HA4
    Secondary Accessions:
    • B3KQ46
    • Q5T2W6
    • Q6UX67
    • Q6ZR77
    • Q9NWV0

    Protein attributes for C1orf159 Gene

    Size:
    380 amino acids
    Molecular mass:
    40283 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf159 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf159 Gene

Proteomics data for C1orf159 Gene at MOPED

Post-translational modifications for C1orf159 Gene

  • Glycosylation at Asn104, Asn111, and Asn128

No data available for DME Specific Peptides for C1orf159 Gene

Domains for C1orf159 Gene

Protein Domains for C1orf159 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C1orf159: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf159 Gene

Function for C1orf159 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf159 Gene

Localization for C1orf159 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf159 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf159 Gene COMPARTMENTS Subcellular localization image for C1orf159 gene
Compartment Confidence
extracellular 3
plasma membrane 2
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C1orf159 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1orf159: view

Pathways for C1orf159 Gene

SuperPathways for C1orf159 Gene

No Data Available

Interacting Proteins for C1orf159 Gene

Gene Ontology (GO) - Biological Process for C1orf159 Gene

None

No data available for Pathways by source for C1orf159 Gene

Transcripts for C1orf159 Gene

Unigene Clusters for C1orf159 Gene

Chromosome 1 open reading frame 159:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf159 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c · 10d ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c ^ 15a ·
SP1: - - - - - - -
SP2: - - - - - - - - - - - - - - - -
SP3: - - - - - - - - - - - - - -
SP4: - - - -
SP5: - - - - - - - -
SP6: - - - - - - - - -
SP7: - - - - - - -
SP8: - - - - - -
SP9: - - - - - - -
SP10: - -
SP11: - - - - - -
SP12: - - - - - - -
SP13: - - - - - - - - - - - - -
SP14: - - - - - - - - -
SP15: - - - - - - - - - -
SP16:
SP17: - - - - - - - -
SP18:

ExUns: 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b ^ 21
SP1: - -
SP2: - -
SP3: - -
SP4: - -
SP5: - -
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16: -
SP17:
SP18:

Relevant External Links for C1orf159 Gene

GeneLoc Exon Structure for
C1orf159
ECgene alternative splicing isoforms for
C1orf159

Expression for C1orf159 Gene

mRNA expression in normal human tissues for C1orf159 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C1orf159 Gene

SOURCE GeneReport for Unigene cluster for C1orf159 Gene Hs.235095

genes like me logo Genes that share expressions with C1orf159: view

Orthologs for C1orf159 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf159 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf159 36
  • 96.85 (n)
  • 94.59 (a)
cow
(Bos Taurus)
Mammalia C16H1orf159 36
  • 75.04 (n)
  • 66.84 (a)
FLJ20584 37
  • 60 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1orf159 37
  • 42 (a)
OneToOne
C5H1orf159 36
  • 76.46 (n)
  • 72.16 (a)
mouse
(Mus musculus)
Mammalia 9430015G10Rik 36
  • 75.93 (n)
  • 73.33 (a)
9430015G10Rik 16
9430015G10Rik 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf159 37
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf159 37
  • 34 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1311517 36
  • 76.6 (n)
  • 72.73 (a)
chicken
(Gallus gallus)
Aves C1orf159 37
  • 55 (a)
OneToOne
C21H1ORF159 36
  • 61.88 (n)
  • 59.67 (a)
lizard
(Anolis carolinensis)
Reptilia C1orf159 37
  • 46 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c1orf159 36
  • 55.16 (n)
  • 55.95 (a)
zebrafish
(Danio rerio)
Actinopterygii C6H1orf159 37
  • 41 (a)
OneToOne
LOC559239 36
  • 49.48 (n)
  • 47.8 (a)
Species with no ortholog for C1orf159:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf159 Gene

ENSEMBL:
Gene Tree for C1orf159 (if available)
TreeFam:
Gene Tree for C1orf159 (if available)

Paralogs for C1orf159 Gene

No data available for Paralogs for C1orf159 Gene

Variants for C1orf159 Gene

Sequence variations from dbSNP and Humsavar for C1orf159 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1133647 -- 1,081,961(-) CCCCC(A/C)TCTGA utr-variant-3-prime, nc-transcript-variant
rs2298215 -- 1,083,795(-) AGTCT(C/G)TCATG intron-variant
rs3737727 -- 1,087,765(-) GGCCC(C/T)GCCAT intron-variant
rs3737728 -- 1,086,035(-) CCGTC(C/T)GCTCA intron-variant
rs3766190 -- 1,082,315(-) AAGCA(C/T)GCAGC utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf159 Gene

Variant ID Type Subtype PubMed ID
dgv3e1 CNV Complex 17122850
nsv10161 CNV Gain+Loss 18304495
essv2408 CNV CNV 17122850
nsv517709 CNV Gain+Loss 19592680
nsv428334 CNV Gain 18775914
dgv2n67 CNV Gain 20364138
nsv871883 CNV Gain+Loss 21882294
dgv9n71 CNV Loss 21882294
nsv871547 CNV Loss 21882294
dgv10n71 CNV Loss 21882294
dgv11n71 CNV Loss 21882294
dgv12n71 CNV Loss 21882294
dgv13n71 CNV Loss 21882294
nsv509146 CNV Insertion 20534489
nsv870874 CNV Loss 21882294
nsv871349 CNV Loss 21882294
nsv470680 CNV Loss 18288195
nsv870663 CNV Loss 21882294
dgv17n71 CNV Loss 21882294
nsv1409 CNV Insertion 18451855
esv2744030 CNV Deletion 23290073
esv1010559 CNV Gain 20482838
esv23529 CNV Gain 19812545
esv1281251 CNV Insertion 17803354
dgv18n71 CNV Loss 21882294
nsv871553 CNV Loss 21882294
dgv19n71 CNV Loss 21882294
dgv20n71 CNV Loss 21882294
nsv160439 CNV Loss 16902084
esv2744141 CNV Deletion 23290073
nsv870771 CNV Loss 21882294
esv32594 CNV Loss 17666407

Relevant External Links for C1orf159 Gene

HapMap Linkage Disequilibrium report
C1orf159

Disorders for C1orf159 Gene

No disorders were found for C1orf159 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf159 Gene

Publications for C1orf159 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for C1orf159 Gene

  • antibodies-online peptides for C1orf159
  • antibodies-online antibodies for C1orf159
  • antibodies-online kits for C1orf159

Sources for C1orf159 Gene

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