Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1orf143 Gene

Aliases for C1orf143 Gene

  • Chromosome 1 Open Reading Frame 143 2 3 5

External Ids for C1orf143 Gene

Previous GeneCards Identifiers for C1orf143 Gene

  • GC01P215072
  • GC01U901251
  • GC01P218684

Summaries for C1orf143 Gene

GeneCards Summary for C1orf143 Gene

C1orf143 (Chromosome 1 Open Reading Frame 143) is an Uncategorized gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf143 Gene

Genomics for C1orf143 Gene

Regulatory Elements for C1orf143 Gene

Enhancers for C1orf143 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F218487 1.5 FANTOM5 Ensembl ENCODE 12.8 -21.2 -21238 3.6 PKNOX1 INSM2 YBX1 ZNF366 FOS ZNF362 TSHZ1 ZEB2 ZNF518A ZNF843 TGFB2 C1orf143 TGFB2-AS1 GC01P218475 GC01P218504
GH01F218485 0.7 ENCODE 12.8 -24.4 -24353 0.1 HIC1 JUND FOS C1orf143 GC01P218475 GC01P218504
GH01F218537 0.8 Ensembl ENCODE 11.6 +27.6 27560 1.0 SREBF1 JUND JUN CEBPB EP300 RFX5 C1orf143 TGFB2 TGFB2-AS1 ENSG00000212610 GC01M218542
GH01F218472 1.2 FANTOM5 Ensembl ENCODE 11.2 -31.9 -31890 10.5 PKNOX1 SIN3A ZBTB40 RAD21 ZEB1 RFX5 ZNF366 RCOR1 FOS CEBPB TGFB2 C1orf143 TGFB2-AS1 RRP15 GC01P218475 GC01P218504
GH01F218468 0.4 FANTOM5 11.2 -41.2 -41170 0.2 CEBPG C1orf143 TGFB2 TGFB2-AS1 GC01P218475 TGFB2-OT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C1orf143 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf143 Gene

Chromosome:
1
Start:
218,510,096 bp from pter
End:
218,525,978 bp from pter
Size:
15,883 bases
Orientation:
Plus strand

Genomic View for C1orf143 Gene

Genes around C1orf143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for C1orf143 Gene

Proteins for C1orf143 Gene

Post-translational modifications for C1orf143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1orf143 Gene

Domains & Families for C1orf143 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf143 Gene

Function for C1orf143 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1orf143 Gene

Localization for C1orf143 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf143 Gene COMPARTMENTS Subcellular localization image for C1orf143 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf143 Gene

Pathways & Interactions for C1orf143 Gene

SuperPathways for C1orf143 Gene

No Data Available

Interacting Proteins for C1orf143 Gene

Gene Ontology (GO) - Biological Process for C1orf143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf143 Gene

Transcripts for C1orf143 Gene

mRNA/cDNA for C1orf143 Gene

(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf143 Gene

No ASD Table

Relevant External Links for C1orf143 Gene

GeneLoc Exon Structure for
C1orf143
ECgene alternative splicing isoforms for
C1orf143

Expression for C1orf143 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1orf143 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf143 Gene

This gene is overexpressed in Brain - Hypothalamus (x6.5), Brain - Hippocampus (x6.0), Brain - Amygdala (x5.9), Brain - Nucleus accumbens (basal ganglia) (x5.6), and Brain - Frontal Cortex (BA9) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of C1orf143 Gene:

C1orf143
genes like me logo Genes that share expression patterns with C1orf143: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C1orf143 Gene

Orthologs for C1orf143 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1orf143 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf143 35
  • 96 (a)
OneToOne
Species where no ortholog for C1orf143 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf143 Gene

ENSEMBL:
Gene Tree for C1orf143 (if available)
TreeFam:
Gene Tree for C1orf143 (if available)

Paralogs for C1orf143 Gene

No data available for Paralogs for C1orf143 Gene

Variants for C1orf143 Gene

Variation tolerance for C1orf143 Gene

Gene Damage Index Score: 3.49; 55.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1orf143 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1orf143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for C1orf143 Gene

Disorders for C1orf143 Gene

No disorders were found for C1orf143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C1orf143 Gene

Publications for C1orf143 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for C1orf143 Gene

Sources for C1orf143 Gene

Content
Loading form....