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Aliases for C1orf140 Gene

Subcategory (RNA class) for C1orf140 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for C1orf140 Gene

  • Uncharacterized LOC400804 3 5

External Ids for C1orf140 Gene

Previous GeneCards Identifiers for C1orf140 Gene

  • GC01M217892
  • GC01M219569
  • GC01M221505

Summaries for C1orf140 Gene

GeneCards Summary for C1orf140 Gene

C1orf140 (Uncharacterized LOC400804) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf140 Gene

Genomics for C1orf140 Gene

Regulatory Elements for C1orf140 Gene

Enhancers for C1orf140 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G221334 1.1 Ensembl ENCODE 10.2 +0.6 619 2.4 ZSCAN4 SIN3A KLF17 FEZF1 RAD21 ZEB1 YY1 GATA2 ZSCAN5C SCRT2 C1orf140 GC01P221336 GC01M221330
GH01G221315 0.5 ENCODE 9.8 +20.7 20723 0.2 TBP NFYB CEBPB PRDM10 RFX5 C1orf140 LOC105372932 GC01M221330
GH01G221309 0.5 FANTOM5 9.7 +27.1 27060 0.2 PKNOX1 ZNF680 SCRT2 C1orf140 LOC105372932 GC01M221330
GH01G221283 0.9 ENCODE 4.4 +52.2 52245 0.8 PKNOX1 NFIB INSM2 ZNF195 FEZF1 GLI4 ZSCAN5C ZNF350 ZNF174 TSHZ1 C1orf140 GC01P221297 GC01M221267
GH01G221349 0.4 ENCODE 9 -13.9 -13917 1.0 ZNF512 ATF2 C1orf140 PIR33032
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1orf140 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf140 Gene

Chromosome:
1
Start:
221,329,928 bp from pter
End:
221,336,296 bp from pter
Size:
6,369 bases
Orientation:
Minus strand

Genomic View for C1orf140 Gene

Genes around C1orf140 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf140 Gene

Proteins for C1orf140 Gene

  • Protein details for C1orf140 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VVS0-CA140_HUMAN
    Recommended name:
    Putative uncharacterized protein C1orf140
    Protein Accession:
    Q5VVS0
    Secondary Accessions:
    • Q6ZR57

    Protein attributes for C1orf140 Gene

    Size:
    124 amino acids
    Molecular mass:
    13926 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf140 Gene

Post-translational modifications for C1orf140 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1orf140 Gene

Domains & Families for C1orf140 Gene

Protein Domains for C1orf140 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf140: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf140 Gene

Function for C1orf140 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1orf140 Gene

Localization for C1orf140 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C1orf140 Gene

Pathways & Interactions for C1orf140 Gene

SuperPathways for C1orf140 Gene

No Data Available

Interacting Proteins for C1orf140 Gene

Gene Ontology (GO) - Biological Process for C1orf140 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf140 Gene

Drugs & Compounds for C1orf140 Gene

No Compound Related Data Available

Transcripts for C1orf140 Gene

mRNA/cDNA for C1orf140 Gene

(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf140 Gene

Uncharacterized LOC400804:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf140 Gene

No ASD Table

Relevant External Links for C1orf140 Gene

GeneLoc Exon Structure for
C1orf140

Expression for C1orf140 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1orf140 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf140 Gene

This gene is overexpressed in Artery - Tibial (x10.1).

SOURCE GeneReport for Unigene cluster for C1orf140 Gene:

Hs.722626
genes like me logo Genes that share expression patterns with C1orf140: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1orf140 Gene

Orthologs for C1orf140 Gene

Evolution for C1orf140 Gene

ENSEMBL:
Gene Tree for C1orf140 (if available)
TreeFam:
Gene Tree for C1orf140 (if available)

No data available for Orthologs for C1orf140 Gene

Paralogs for C1orf140 Gene

No data available for Paralogs for C1orf140 Gene

Variants for C1orf140 Gene

Sequence variations from dbSNP and Humsavar for C1orf140 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000105786 -- 221,337,371(+) GTTTA(A/G)ATTCC intron-variant, upstream-variant-2KB
rs1001421743 -- 221,332,290(+) TTACA(A/G)ATGCA intron-variant, nc-transcript-variant
rs1001584064 -- 221,338,084(+) ATTTA(A/G)TATGA intron-variant, upstream-variant-2KB
rs1001608420 -- 221,335,779(+) CCTAA(A/G)GGTTA intron-variant
rs1001725743 -- 221,329,435(+) AGAGT(A/G)GTTGG intron-variant, downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for C1orf140 Gene

Disorders for C1orf140 Gene

Relevant External Links for C1orf140

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1orf140

No disorders were found for C1orf140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf140 Gene

Publications for C1orf140 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C1orf140 Gene

Sources for C1orf140 Gene

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