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Aliases for C1orf127 Gene

Aliases for C1orf127 Gene

  • Chromosome 1 Open Reading Frame 127 2 3 5

External Ids for C1orf127 Gene

Previous GeneCards Identifiers for C1orf127 Gene

  • GC01M010941
  • GC01M010159
  • GC01M011006

Summaries for C1orf127 Gene

GeneCards Summary for C1orf127 Gene

C1orf127 (Chromosome 1 Open Reading Frame 127) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf127 Gene

Genomics for C1orf127 Gene

Regulatory Elements for C1orf127 Gene

Enhancers for C1orf127 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G010662 3.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.4 +305.5 305539 28.0 FOXA2 PKNOX1 ZFP64 ARID4B DMAP1 FEZF1 ZNF2 FOS ZNF263 SP5 EXOSC10 ENSG00000226849 C1orf127 DFFA PGD RBP7 CASZ1 GC01P010673
GH01G010735 3 VISTA Ensembl ENCODE dbSUPER 10.2 +244.5 244512 5.0 ARNT ARID4B SIN3A ZNF48 YY1 GLIS2 KLF7 ZNF263 SP3 YY2 FBXO44 C1orf127 CASZ1 GC01P010673
GH01G010539 2.1 ENCODE dbSUPER 9.8 +441.5 441507 2.2 FOXA2 MLX DNMT3B YY1 RARA SLC30A9 FOS MIXL1 SP5 NFYC PGD C1orf127 PIR58493 GC01P010598
GH01G010964 1.2 Ensembl ENCODE 16.4 +16.3 16318 2.4 ELF3 PKNOX1 ATF1 WRNIP1 ZNF143 RELB IKZF2 SMARCA5 PAF1 MCM3 C1orf127 HSPE1P24
GH01G010959 0.9 ENCODE 20.1 +21.5 21456 1.8 CBX3 PTBP1 RAD21 ZNF121 SCRT2 ZNF143 PCBP1 ZNF391 CREM PAF1 C1orf127 EXOSC10 HSPE1P24
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1orf127 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf127 Gene

Chromosome:
1
Start:
10,946,471 bp from pter
End:
10,982,037 bp from pter
Size:
35,567 bases
Orientation:
Minus strand

Genomic View for C1orf127 Gene

Genes around C1orf127 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf127 Gene

Proteins for C1orf127 Gene

  • Protein details for C1orf127 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9H9-CA127_HUMAN
    Recommended name:
    Uncharacterized protein C1orf127
    Protein Accession:
    Q8N9H9
    Secondary Accessions:
    • A0AVG8
    • A6NKM7
    • Q5VXJ2

    Protein attributes for C1orf127 Gene

    Size:
    656 amino acids
    Molecular mass:
    69787 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf127 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf127 Gene

Post-translational modifications for C1orf127 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf127 Gene

No data available for DME Specific Peptides for C1orf127 Gene

Domains & Families for C1orf127 Gene

Protein Domains for C1orf127 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf127 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf127: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf127 Gene

Function for C1orf127 Gene

genes like me logo Genes that share phenotypes with C1orf127: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1orf127 Gene

Localization for C1orf127 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1orf127 gene
Compartment Confidence
mitochondrion 3
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf127 Gene

Pathways & Interactions for C1orf127 Gene

SuperPathways for C1orf127 Gene

No Data Available

Interacting Proteins for C1orf127 Gene

Gene Ontology (GO) - Biological Process for C1orf127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf127 Gene

Drugs & Compounds for C1orf127 Gene

No Compound Related Data Available

Transcripts for C1orf127 Gene

mRNA/cDNA for C1orf127 Gene

Unigene Clusters for C1orf127 Gene

Chromosome 1 open reading frame 127:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf127 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c
SP1: - - - -
SP2:
SP3:
SP4: -
SP5:

Relevant External Links for C1orf127 Gene

GeneLoc Exon Structure for
C1orf127
ECgene alternative splicing isoforms for
C1orf127

Expression for C1orf127 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1orf127 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf127 Gene

This gene is overexpressed in Muscle - Skeletal (x16.3), Pancreas (x8.6), and Brain - Cerebellum (x5.1).

Protein differential expression in normal tissues from HIPED for C1orf127 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C1orf127 Gene



Protein tissue co-expression partners for C1orf127 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1orf127 Gene:

C1orf127

SOURCE GeneReport for Unigene cluster for C1orf127 Gene:

Hs.127026
genes like me logo Genes that share expression patterns with C1orf127: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1orf127 Gene

Orthologs for C1orf127 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf127 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf127 34
  • 98.3 (n)
C1orf127 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm572 34 16 35
  • 77.93 (n)
rat
(Rattus norvegicus)
Mammalia LOC691354 34
  • 73.66 (n)
oppossum
(Monodelphis domestica)
Mammalia C1orf127 35
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC101883649 34
  • 48.8 (n)
C23H1orf127 35
  • 34 (a)
OneToOne
Species where no ortholog for C1orf127 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf127 Gene

ENSEMBL:
Gene Tree for C1orf127 (if available)
TreeFam:
Gene Tree for C1orf127 (if available)

Paralogs for C1orf127 Gene

No data available for Paralogs for C1orf127 Gene

Variants for C1orf127 Gene

Sequence variations from dbSNP and Humsavar for C1orf127 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000054692 -- 10,975,341(+) CAGAG(A/G)TTGTG intron-variant
rs1000184126 -- 10,960,337(+) AGGCG(A/G)AAGTT intron-variant
rs1000211439 -- 10,956,539(+) GGCAC(A/C)ATCTC intron-variant
rs1000272318 -- 10,954,838(+) CGCTC(C/T)GGCCT intron-variant
rs1000368192 -- 10,950,770(+) GTCAA(A/C)TACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf127 Gene

Variant ID Type Subtype PubMed ID
esv2672799 CNV deletion 23128226
esv2758921 CNV loss 17122850
esv3350549 CNV duplication 20981092
esv3585209 CNV loss 21293372
nsv1120069 OTHER inversion 24896259
nsv508869 CNV insertion 20534489
nsv832425 CNV loss 17160897

Variation tolerance for C1orf127 Gene

Residual Variation Intolerance Score: 94% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.24; 76.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1orf127 Gene

Human Gene Mutation Database (HGMD)
C1orf127
SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1orf127

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf127 Gene

Disorders for C1orf127 Gene

Relevant External Links for C1orf127

Genetic Association Database (GAD)
C1orf127
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1orf127

No disorders were found for C1orf127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf127 Gene

Publications for C1orf127 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4 64
  2. Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases. (PMID: 22693459) Li R. … Richards J.B. (PLoS Genet. 2012) 3 64
  3. Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. (PMID: 22327514) Postel-Vinay S. … Delattre O. (Nat. Genet. 2012) 46 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64

Products for C1orf127 Gene

Sources for C1orf127 Gene

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