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Aliases for C1orf123 Gene

Aliases for C1orf123 Gene

  • Chromosome 1 Open Reading Frame 123 2 3

External Ids for C1orf123 Gene

Previous GeneCards Identifiers for C1orf123 Gene

  • GC01M053392
  • GC01M053452
  • GC01M053679
  • GC01M051795

Summaries for C1orf123 Gene

GeneCards Summary for C1orf123 Gene

C1orf123 (Chromosome 1 Open Reading Frame 123) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf123 Gene

Genomics for C1orf123 Gene

Regulatory Elements for C1orf123 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C1orf123 Gene

Start:
53,214,099 bp from pter
End:
53,220,617 bp from pter
Size:
6,519 bases
Orientation:
Minus strand

Genomic View for C1orf123 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf123 Gene

Proteins for C1orf123 Gene

  • Protein details for C1orf123 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWV4-CA123_HUMAN
    Recommended name:
    UPF0587 protein C1orf123
    Protein Accession:
    Q9NWV4
    Secondary Accessions:

    Protein attributes for C1orf123 Gene

    Size:
    160 amino acids
    Molecular mass:
    18048 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf123 Gene

Proteomics data for C1orf123 Gene at MOPED

Post-translational modifications for C1orf123 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf123 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf123 Gene

Domains for C1orf123 Gene

Protein Domains for C1orf123 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf123 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NWV4

UniProtKB/Swiss-Prot:

CA123_HUMAN :
  • Q9NWV4
Family:
  • Belongs to the UPF0587 family.
genes like me logo Genes that share domains with C1orf123: view

No data available for Gene Families for C1orf123 Gene

Function for C1orf123 Gene

Gene Ontology (GO) - Molecular Function for C1orf123 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C1orf123: view

Phenotypes for C1orf123 Gene

GenomeRNAi human phenotypes for C1orf123:
genes like me logo Genes that share phenotypes with C1orf123: view

Animal Model Products

CRISPR Products

miRNA for C1orf123 Gene

miRTarBase miRNAs that target C1orf123

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf123

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C1orf123 Gene

Localization for C1orf123 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf123 Gene COMPARTMENTS Subcellular localization image for C1orf123 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C1orf123 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with C1orf123: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C1orf123 Gene

Pathways for C1orf123 Gene

SuperPathways for C1orf123 Gene

No Data Available

Interacting Proteins for C1orf123 Gene

Gene Ontology (GO) - Biological Process for C1orf123 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C1orf123: view

No data available for Pathways by source for C1orf123 Gene

Transcripts for C1orf123 Gene

Unigene Clusters for C1orf123 Gene

Chromosome 1 open reading frame 123:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1orf123

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf123 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d · 9e · 9f
SP1: - - -
SP2: - - -
SP3: - - - -
SP4: - -
SP5: -
SP6:
SP7: -

Relevant External Links for C1orf123 Gene

GeneLoc Exon Structure for
C1orf123
ECgene alternative splicing isoforms for
C1orf123

Expression for C1orf123 Gene

mRNA expression in normal human tissues for C1orf123 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C1orf123 Gene

SOURCE GeneReport for Unigene cluster for C1orf123 Gene Hs.525391

genes like me logo Genes that share expressions with C1orf123: view

Expression partners for C1orf123 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C1orf123 Gene

Orthologs for C1orf123 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C1orf123 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C3H1orf123 35
  • 91.67 (n)
  • 95.62 (a)
C3H1orf123 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H1orf123 35
  • 91.25 (n)
  • 95 (a)
C1orf123 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 0610037L13Rik 35
  • 91.56 (n)
  • 94.94 (a)
0610037L13Rik 16
0610037L13Rik 36
  • 77 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf123 35
  • 100 (n)
  • 100 (a)
-- 36
  • 100 (a)
OneToMany
-- 36
  • 99 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1559786 35
  • 90.21 (n)
  • 95.62 (a)
oppossum
(Monodelphis domestica)
Mammalia C1orf123 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf123 36
  • 83 (a)
OneToOne
chicken
(Gallus gallus)
Aves C8H1ORF123 35
  • 79.58 (n)
  • 83.75 (a)
C1orf123 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C1orf123 36
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497300 35
  • 75 (n)
  • 80.62 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.23495 35
si:ch211-284b7.3 35
  • 74.79 (n)
  • 81.87 (a)
C2H1orf123 36
  • 82 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10583 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003919 35
  • 54.09 (n)
  • 44.65 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4646 35
  • 55.49 (n)
  • 46.84 (a)
CG4646 36
  • 44 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F46B6.12 35
  • 55.27 (n)
  • 48.73 (a)
F46B6.12 36
  • 46 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL238W 35
  • 43.61 (n)
  • 30.08 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F10153g 35
  • 46 (n)
  • 34.67 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YCR090C 35
  • 43.01 (n)
  • 27.1 (a)
-- 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G32930 35
  • 50.85 (n)
  • 38.46 (a)
rice
(Oryza sativa)
Liliopsida Os01g0565600 35
  • 52.69 (n)
  • 41.94 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU08505 35
  • 51.9 (n)
  • 42.95 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC2D10.03c 35
  • 49.54 (n)
  • 40.41 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 48 (a)
OneToOne
Species with no ortholog for C1orf123:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C1orf123 Gene

ENSEMBL:
Gene Tree for C1orf123 (if available)
TreeFam:
Gene Tree for C1orf123 (if available)

Paralogs for C1orf123 Gene

Pseudogenes.org Pseudogenes for C1orf123 Gene

genes like me logo Genes that share paralogs with C1orf123: view

No data available for Paralogs for C1orf123 Gene

Variants for C1orf123 Gene

Sequence variations from dbSNP and Humsavar for C1orf123 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs436887 -- 53,218,853(+) TTGGG(C/G)GGGGA intron-variant
rs1134688 -- 53,216,027(-) GAGTC(A/C)GGGAC reference, synonymous-codon
rs1679913 -- 53,220,711(+) CGCGC(C/G)GCTGC upstream-variant-2KB
rs2297664 -- 53,216,184(-) AGACA(C/G)GTACT intron-variant
rs3736118 -- 53,218,652(+) AAAAT(A/G)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf123 Gene

Variant ID Type Subtype PubMed ID
esv2422213 CNV Duplication 17116639
nsv829871 CNV Loss 17160897

Relevant External Links for C1orf123 Gene

HapMap Linkage Disequilibrium report
C1orf123

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf123 Gene

Disorders for C1orf123 Gene

No disorders were found for C1orf123 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for C1orf123 Gene

Publications for C1orf123 Gene

  1. Integrated genomics and proteomics of the Torpedo californica electric organ: concordance with the mammalian neuromuscular junction. (PMID: 21798097) Mate S.E. … Hoffman E.P. (Skelet Muscle 2011) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C1orf123 Gene

Sources for C1orf123 Gene

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