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Aliases for C1orf111 Gene

Aliases for C1orf111 Gene

  • Chromosome 1 Open Reading Frame 111 2 3
  • Uncharacterized Protein C1orf111 3
  • HSD20 3

External Ids for C1orf111 Gene

Summaries for C1orf111 Gene

GeneCards Summary for C1orf111 Gene

C1orf111 (Chromosome 1 Open Reading Frame 111) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf111 Gene

Genomics for C1orf111 Gene

Genomic Location for C1orf111 Gene

Start:
162,373,203 bp from pter
End:
162,377,227 bp from pter
Size:
4,025 bases
Orientation:
Minus strand

Genomic View for C1orf111 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf111 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf111 Gene

Regulatory Elements for C1orf111 Gene

Proteins for C1orf111 Gene

  • Protein details for C1orf111 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0L3-CA111_HUMAN
    Recommended name:
    Uncharacterized protein C1orf111
    Protein Accession:
    Q5T0L3
    Secondary Accessions:
    • Q6X961
    • Q8NEC3

    Protein attributes for C1orf111 Gene

    Size:
    261 amino acids
    Molecular mass:
    29150 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAP20051.1; Type=Frameshift; Positions=224; Evidence={ECO:0000305};

neXtProt entry for C1orf111 Gene

Proteomics data for C1orf111 Gene at MOPED

Post-translational modifications for C1orf111 Gene

No Post-translational modifications

Other Protein References for C1orf111 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf111 Gene

Domains for C1orf111 Gene

Protein Domains for C1orf111 Gene

ProtoNet:
genes like me logo Genes that share domains with C1orf111: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf111 Gene

Function for C1orf111 Gene

Gene Ontology (GO) - Molecular Function for C1orf111 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C1orf111: view

miRNA for C1orf111 Gene

miRTarBase miRNAs that target C1orf111

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C1orf111 Gene

Localization for C1orf111 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf111 Gene COMPARTMENTS Subcellular localization image for C1orf111 gene
Compartment Confidence
extracellular 2
cytosol 1
lysosome 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for C1orf111 Gene

Pathways for C1orf111 Gene

SuperPathways for C1orf111 Gene

No Data Available

Interacting Proteins for C1orf111 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000356912%0d%0a9606.ENSP00000340176%0d%0a9606.ENSP00000311695%0d%0a
Selected Interacting proteins: ENSP00000356912 Q5T0L3-CA111_HUMAN for C1orf111 Gene via STRING UniProtKB I2D

Gene Ontology (GO) - Biological Process for C1orf111 Gene

None

No data available for Pathways by source for C1orf111 Gene

Transcripts for C1orf111 Gene

mRNA/cDNA for C1orf111 Gene

Unigene Clusters for C1orf111 Gene

Chromosome 1 open reading frame 111:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf111 Gene

No ASD Table

Relevant External Links for C1orf111 Gene

GeneLoc Exon Structure for
C1orf111
ECgene alternative splicing isoforms for
C1orf111

Expression for C1orf111 Gene

mRNA expression in normal human tissues for C1orf111 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf111 Gene

This gene is overexpressed in Testis (43.6).

SOURCE GeneReport for Unigene cluster for C1orf111 Gene Hs.97784

genes like me logo Genes that share expressions with C1orf111: view

Orthologs for C1orf111 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C1orf111 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf111 36
  • 99.49 (n)
  • 99.23 (a)
C1orf111 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C3H1orf111 36
  • 83.13 (n)
  • 74.9 (a)
C3H1orf111 37
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1orf111 37
  • 77 (a)
OneToOne
C38H1orf111 36
  • 85.52 (n)
  • 78.69 (a)
mouse
(Mus musculus)
Mammalia 1700015E13Rik 36
  • 85.22 (n)
  • 80.79 (a)
1700015E13Rik 16
1700015E13Rik 37
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf111 37
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf111 37
  • 39 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1565283 36
  • 86.21 (n)
  • 83.25 (a)
Species with no ortholog for C1orf111:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf111 Gene

ENSEMBL:
Gene Tree for C1orf111 (if available)
TreeFam:
Gene Tree for C1orf111 (if available)

Paralogs for C1orf111 Gene

No data available for Paralogs for C1orf111 Gene

Variants for C1orf111 Gene

Sequence variations from dbSNP and Humsavar for C1orf111 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs13823 -- 162,374,279(+) GCCAC(A/G)CACTT reference, synonymous-codon
rs164156 -- 162,373,521(+) TACTC(A/C)GAGGC downstream-variant-500B
rs164157 -- 162,373,527(+) GAGGC(A/G)TATTT downstream-variant-500B
rs164158 -- 162,373,598(+) TCTTC(C/T)CCATG downstream-variant-500B
rs164159 -- 162,374,600(+) TGGGT(A/C/G)TCCCC synonymous-codon, missense, reference

Structural Variations from Database of Genomic Variants (DGV) for C1orf111 Gene

Variant ID Type Subtype PubMed ID
essv5883 CNV CNV 17122850
dgv141e1 CNV Complex 17122850
dgv399n71 CNV Gain 21882294
nsv818511 CNV Gain 17921354
esv34209 CNV Gain 17911159
nsv516482 CNV Gain+Loss 19592680

Relevant External Links for C1orf111 Gene

HapMap Linkage Disequilibrium report
C1orf111

Disorders for C1orf111 Gene

No disorders were found for C1orf111 Gene.

No data available for UniProtKB/Swiss-Prot for C1orf111 Gene

Publications for C1orf111 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for C1orf111 Gene

Sources for C1orf111 Gene

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