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Aliases for C1orf110 Gene

Aliases for C1orf110 Gene

  • Chromosome 1 Open Reading Frame 110 2 3

External Ids for C1orf110 Gene

Summaries for C1orf110 Gene

GeneCards Summary for C1orf110 Gene

C1orf110 (Chromosome 1 Open Reading Frame 110) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf110 Gene

Genomics for C1orf110 Gene

Genomic Location for C1orf110 Gene

Start:
162,824,458 bp from pter
End:
162,868,815 bp from pter
Size:
44,358 bases
Orientation:
Minus strand

Genomic View for C1orf110 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf110 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf110 Gene

Regulatory Elements for C1orf110 Gene

Proteins for C1orf110 Gene

  • Protein details for C1orf110 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UF4-CA110_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein C1orf110
    Protein Accession:
    Q86UF4
    Secondary Accessions:
    • Q5JSG1
    • Q6ZW57

    Protein attributes for C1orf110 Gene

    Size:
    302 amino acids
    Molecular mass:
    34103 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BC040018; Type=Frameshift; Positions=200; Evidence={ECO:0000305}; Sequence=CAI13459.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for C1orf110 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf110 Gene

Proteomics data for C1orf110 Gene at MOPED

Post-translational modifications for C1orf110 Gene

No Post-translational modifications

Other Protein References for C1orf110 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf110 Gene

Domains for C1orf110 Gene

Protein Domains for C1orf110 Gene

ProtoNet:
genes like me logo Genes that share domains with C1orf110: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf110 Gene

Function for C1orf110 Gene

Phenotypes for C1orf110 Gene

GenomeRNAi human phenotypes for C1orf110:
genes like me logo Genes that share phenotypes with C1orf110: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf110 Gene

Localization for C1orf110 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf110 Gene COMPARTMENTS Subcellular localization image for C1orf110 gene
Compartment Confidence
nucleus 3
cytosol 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for C1orf110 Gene

Pathways for C1orf110 Gene

SuperPathways for C1orf110 Gene

No Data Available

Interacting Proteins for C1orf110 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000356886%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000356886 for C1orf110 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C1orf110 Gene

None

No data available for Pathways by source for C1orf110 Gene

Transcripts for C1orf110 Gene

mRNA/cDNA for C1orf110 Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf110 Gene

Chromosome 1 open reading frame 110:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf110 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c
SP1: -
SP2: -
SP3:

Relevant External Links for C1orf110 Gene

GeneLoc Exon Structure for
C1orf110
ECgene alternative splicing isoforms for
C1orf110

Expression for C1orf110 Gene

mRNA expression in normal human tissues for C1orf110 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf110 Gene

This gene is overexpressed in Artery - Coronary (10.5), Esophagus - Mucosa (8.1), Artery - Aorta (6.6), and Artery - Tibial (5.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C1orf110 Gene

SOURCE GeneReport for Unigene cluster for C1orf110 Gene Hs.407631

genes like me logo Genes that share expressions with C1orf110: view

Orthologs for C1orf110 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C1orf110 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf110 36
  • 99.12 (n)
  • 97.68 (a)
C1orf110 37
  • 83 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C1orf110 37
  • 65 (a)
OneToOne
C3H1orf110 36
  • 78 (n)
  • 65.31 (a)
dog
(Canis familiaris)
Mammalia C1orf110 37
  • 64 (a)
OneToOne
C38H1orf110 36
  • 75.97 (n)
  • 65.45 (a)
mouse
(Mus musculus)
Mammalia 1700084C01Rik 36
  • 71.91 (n)
  • 56.64 (a)
1700084C01Rik 16
1700084C01Rik 37
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf110 37
  • 34 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1560672 36
  • 71.58 (n)
  • 57.19 (a)
Species with no ortholog for C1orf110:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf110 Gene

ENSEMBL:
Gene Tree for C1orf110 (if available)
TreeFam:
Gene Tree for C1orf110 (if available)

Paralogs for C1orf110 Gene

No data available for Paralogs for C1orf110 Gene

Variants for C1orf110 Gene

Sequence variations from dbSNP and Humsavar for C1orf110 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1355284 -- 162,858,270(-) TGGCT(G/T)TCCTG intron-variant
rs1355285 -- 162,858,026(-) ATTCA(A/G)TGATA intron-variant
rs1355286 -- 162,858,008(-) GAGTG(A/G)ATTAT intron-variant
rs1510312 -- 162,862,892(-) CAGGA(A/G)GTTTG intron-variant, upstream-variant-2KB
rs1510313 -- 162,860,196(-) TACTC(C/T)TAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf110 Gene

Variant ID Type Subtype PubMed ID
nsv516482 CNV Gain+Loss 19592680
esv2666263 CNV Deletion 23128226

Relevant External Links for C1orf110 Gene

HapMap Linkage Disequilibrium report
C1orf110

Disorders for C1orf110 Gene

Relevant External Links for C1orf110

Genetic Association Database (GAD)
C1orf110
Human Genome Epidemiology (HuGE) Navigator
C1orf110
genes like me logo Genes that share disorders with C1orf110: view

No data available for UniProtKB/Swiss-Prot for C1orf110 Gene

Publications for C1orf110 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  5. Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study. (PMID: 19536175) Ehret G.B. … Chakravarti A. (Eur. J. Hum. Genet. 2009) 3

Products for C1orf110 Gene

Sources for C1orf110 Gene

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