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Aliases for C1orf101 Gene

Aliases for C1orf101 Gene

  • Chromosome 1 Open Reading Frame 101 2 3

External Ids for C1orf101 Gene

Previous GeneCards Identifiers for C1orf101 Gene

  • GC01P240951
  • GC01P242691
  • GC01P244618
  • GC01P215007

Summaries for C1orf101 Gene

GeneCards Summary for C1orf101 Gene

C1orf101 (Chromosome 1 Open Reading Frame 101) is a Protein Coding gene. An important paralog of this gene is CATSPERD.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf101 Gene

Genomics for C1orf101 Gene

Regulatory Elements for C1orf101 Gene

Genomic Location for C1orf101 Gene

Start:
244,454,377 bp from pter
End:
244,641,177 bp from pter
Size:
186,801 bases
Orientation:
Plus strand

Genomic View for C1orf101 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1orf101 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf101 Gene

Proteins for C1orf101 Gene

  • Protein details for C1orf101 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY80-CA101_HUMAN
    Recommended name:
    Uncharacterized protein C1orf101
    Protein Accession:
    Q5SY80
    Secondary Accessions:
    • B4DZR4
    • B7Z7X5
    • E9PEA3
    • Q8IYZ6

    Protein attributes for C1orf101 Gene

    Size:
    951 amino acids
    Molecular mass:
    109662 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BC028392; Type=Frameshift; Positions=418; Evidence={ECO:0000305};

    Alternative splice isoforms for C1orf101 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf101 Gene

Proteomics data for C1orf101 Gene at MOPED

Post-translational modifications for C1orf101 Gene

  • Glycosylation at Asn61, Asn114, Asn472, and Asn535
  • Modification sites at PhosphoSitePlus

Other Protein References for C1orf101 Gene

No data available for DME Specific Peptides for C1orf101 Gene

Domains for C1orf101 Gene

Protein Domains for C1orf101 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf101 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf101: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1orf101 Gene

Function for C1orf101 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1orf101 Gene

Localization for C1orf101 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1orf101 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf101 Gene COMPARTMENTS Subcellular localization image for C1orf101 gene
Compartment Confidence
plasma membrane 3
endoplasmic reticulum 1
extracellular 1

Gene Ontology (GO) - Cellular Components for C1orf101 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0036128 CatSper complex IEA --
genes like me logo Genes that share ontologies with C1orf101: view

Pathways for C1orf101 Gene

SuperPathways for C1orf101 Gene

No Data Available

Interacting Proteins for C1orf101 Gene

Gene Ontology (GO) - Biological Process for C1orf101 Gene

None

No data available for Pathways by source for C1orf101 Gene

Transcripts for C1orf101 Gene

Unigene Clusters for C1orf101 Gene

Chromosome 1 open reading frame 101:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf101 Gene

No ASD Table

Relevant External Links for C1orf101 Gene

GeneLoc Exon Structure for
C1orf101
ECgene alternative splicing isoforms for
C1orf101

Expression for C1orf101 Gene

mRNA expression in normal human tissues for C1orf101 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf101 Gene

This gene is overexpressed in Testis (14.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C1orf101 Gene

SOURCE GeneReport for Unigene cluster for C1orf101 Gene Hs.459534

genes like me logo Genes that share expressions with C1orf101: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C1orf101 Gene

Orthologs for C1orf101 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf101 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf101 35
  • 99.19 (n)
  • 98 (a)
C1orf101 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C16H1orf101 35
  • 80.44 (n)
  • 68.34 (a)
C1orf101 36
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1orf101 36
  • 70 (a)
OneToOne
C7H1orf101 35
  • 81.68 (n)
  • 70.42 (a)
mouse
(Mus musculus)
Mammalia Gm16432 36
  • 18 (a)
OneToOne
Gm7068 16
LOC102632386 35
  • 65.37 (n)
  • 52.75 (a)
oppossum
(Monodelphis domestica)
Mammalia C1orf101 36
  • 39 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf101 36
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1565309 35
  • 65.7 (n)
  • 52.02 (a)
chicken
(Gallus gallus)
Aves C1orf101 36
  • 29 (a)
OneToOne
C3H1orf101 35
  • 51.84 (n)
  • 38.51 (a)
lizard
(Anolis carolinensis)
Reptilia C1orf101 36
  • 35 (a)
OneToOne
Species with no ortholog for C1orf101:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf101 Gene

ENSEMBL:
Gene Tree for C1orf101 (if available)
TreeFam:
Gene Tree for C1orf101 (if available)

Paralogs for C1orf101 Gene

Paralogs for C1orf101 Gene

genes like me logo Genes that share paralogs with C1orf101: view

Variants for C1orf101 Gene

Sequence variations from dbSNP and Humsavar for C1orf101 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs905251 -- 244,639,715(+) TCCCA(G/T)TGCAT intron-variant
rs955460 -- 244,630,664(+) atgca(C/G)gaagt intron-variant
rs1393285 -- 244,615,193(-) TTCCT(C/T)TTGGA intron-variant
rs1393286 -- 244,615,084(-) GGTGG(C/T)GGGGC intron-variant
rs1393287 -- 244,615,044(-) TAACA(A/G)TGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf101 Gene

Variant ID Type Subtype PubMed ID
nsv516557 CNV Gain 19592680
nsv818866 CNV Gain 17921354
esv2726640 CNV Deletion 23290073
esv2659474 CNV Deletion 23128226
esv2107521 CNV Deletion 18987734
esv2726651 CNV Deletion 23290073
esv2726662 CNV Deletion 23290073
esv992950 CNV Deletion 20482838
esv1291880 CNV Deletion 17803354
esv24695 CNV Loss 19812545
esv2726673 CNV Deletion 23290073
nsv528017 CNV Gain 19592680
esv1134718 CNV Deletion 17803354
nsv5154 CNV Insertion 18451855
esv2639096 CNV Deletion 19546169
nsv873394 CNV Gain 21882294

Relevant External Links for C1orf101 Gene

HapMap Linkage Disequilibrium report
C1orf101

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1orf101 Gene

Disorders for C1orf101 Gene

Relevant External Links for C1orf101

Genetic Association Database (GAD)
C1orf101
Human Genome Epidemiology (HuGE) Navigator
C1orf101
genes like me logo Genes that share disorders with C1orf101: view

No data available for UniProtKB/Swiss-Prot for C1orf101 Gene

Publications for C1orf101 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for C1orf101 Gene

Sources for C1orf101 Gene

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