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Aliases for C1orf100 Gene

Aliases for C1orf100 Gene

  • Chromosome 1 Open Reading Frame 100 2 3 5

External Ids for C1orf100 Gene

Previous GeneCards Identifiers for C1orf100 Gene

  • GC01P240694
  • GC01P242582
  • GC01P244515
  • GC01P214899

Summaries for C1orf100 Gene

GeneCards Summary for C1orf100 Gene

C1orf100 (Chromosome 1 Open Reading Frame 100) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1orf100 Gene

Genomics for C1orf100 Gene

Regulatory Elements for C1orf100 Gene

Enhancers for C1orf100 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C1orf100 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1orf100 Gene

Chromosome:
1
Start:
244,352,069 bp from pter
End:
244,389,874 bp from pter
Size:
37,806 bases
Orientation:
Plus strand

Genomic View for C1orf100 Gene

Genes around C1orf100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf100 Gene

Proteins for C1orf100 Gene

  • Protein details for C1orf100 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SVJ3-CA100_HUMAN
    Recommended name:
    Uncharacterized protein C1orf100
    Protein Accession:
    Q5SVJ3
    Secondary Accessions:
    • Q5SVJ4

    Protein attributes for C1orf100 Gene

    Size:
    147 amino acids
    Molecular mass:
    17617 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C1orf100 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1orf100 Gene

Proteomics data for C1orf100 Gene at MOPED

Post-translational modifications for C1orf100 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf100 Gene

No data available for DME Specific Peptides for C1orf100 Gene

Domains & Families for C1orf100 Gene

Protein Domains for C1orf100 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1orf100: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1orf100 Gene

Function for C1orf100 Gene

Phenotypes for C1orf100 Gene

genes like me logo Genes that share phenotypes with C1orf100: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1orf100 Gene

Localization for C1orf100 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1orf100 Gene COMPARTMENTS Subcellular localization image for C1orf100 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf100 Gene

Pathways & Interactions for C1orf100 Gene

SuperPathways for C1orf100 Gene

No Data Available

Interacting Proteins for C1orf100 Gene

Gene Ontology (GO) - Biological Process for C1orf100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf100 Gene

Drugs & Compounds for C1orf100 Gene

No Compound Related Data Available

Transcripts for C1orf100 Gene

mRNA/cDNA for C1orf100 Gene

(11) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1orf100 Gene

Chromosome 1 open reading frame 100:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf100 Gene

No ASD Table

Relevant External Links for C1orf100 Gene

GeneLoc Exon Structure for
C1orf100
ECgene alternative splicing isoforms for
C1orf100

Expression for C1orf100 Gene

mRNA expression in normal human tissues for C1orf100 Gene

mRNA differential expression in normal tissues according to GTEx for C1orf100 Gene

This gene is overexpressed in Testis (x37.0).

SOURCE GeneReport for Unigene cluster for C1orf100 Gene Hs.442703

genes like me logo Genes that share expression patterns with C1orf100: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C1orf100 Gene

Orthologs for C1orf100 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf100 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C16H1orf100 35
  • 84.56 (n)
  • 78.68 (a)
C1orf100 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C7H1orf100 35
  • 83.82 (n)
  • 74.26 (a)
mouse
(Mus musculus)
Mammalia 1700016C15Rik 35
  • 78.7 (n)
  • 68.75 (a)
1700016C15Rik 16
1700016C15Rik 36
  • 68 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C1H1orf100 35
  • 98.64 (n)
  • 99.32 (a)
C1orf100 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC689766 35
  • 74.77 (n)
  • 65.97 (a)
oppossum
(Monodelphis domestica)
Mammalia C1orf100 36
  • 46 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf100 36
  • 44 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1orf100 36
  • 20 (a)
OneToOne
Species with no ortholog for C1orf100:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1orf100 Gene

ENSEMBL:
Gene Tree for C1orf100 (if available)
TreeFam:
Gene Tree for C1orf100 (if available)

Paralogs for C1orf100 Gene

Pseudogenes.org Pseudogenes for C1orf100 Gene

genes like me logo Genes that share paralogs with C1orf100: view

No data available for Paralogs for C1orf100 Gene

Variants for C1orf100 Gene

Sequence variations from dbSNP and Humsavar for C1orf100 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1223322 -- 244,382,711(+) cgatt(C/T)tcctg intron-variant
rs1471764 -- 244,386,683(-) GATCC(C/T)GTCTG intron-variant
rs2126343 -- 244,390,205(-) ACCTA(A/G)ACTTA downstream-variant-500B
rs1967042 -- 244,379,010(-) CGGAG(C/T)TTGCA intron-variant
rs1967043 -- 244,378,968(-) CTGGG(C/T)GACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1orf100 Gene

Variant ID Type Subtype PubMed ID
nsv833115 CNV Gain 17160897
esv24742 CNV Gain 19812545
nsv516557 CNV Gain 19592680

Variation tolerance for C1orf100 Gene

Residual Variation Intolerance Score: 74.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.02; 20.96% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C1orf100 Gene

Disorders for C1orf100 Gene

Relevant External Links for C1orf100

Genetic Association Database (GAD)
C1orf100
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1orf100

No disorders were found for C1orf100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1orf100 Gene

Publications for C1orf100 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 67
  2. Genome-wide association study of the age of onset of childhood asthma. (PMID: 22560479) Forno E. … CeledA^n J.C. (J. Allergy Clin. Immunol. 2012) 3
  3. Genome-wide meta-analyses of smoking behaviors in African Americans. (PMID: 22832964) David S.P. … Furberg H. (Transl Psychiatry 2012) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C1orf100 Gene

Sources for C1orf100 Gene

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