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Aliases for C1RL-AS1 Gene

Subcategory (RNA class) for C1RL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C1RL-AS1 Gene

  • C1RL Antisense RNA 1 2 3 5
  • C1RL Antisense RNA 1 (Non-Protein Coding) 2 3
  • ABC12-49244600F4.3 3
  • MATL2963 3

External Ids for C1RL-AS1 Gene

Previous GeneCards Identifiers for C1RL-AS1 Gene

  • GC12P007262
  • GC12P007128
  • GC12P007208
  • GC12P007266
  • GC12P007312
  • GC12P007361
  • GC12P007406

Summaries for C1RL-AS1 Gene

GeneCards Summary for C1RL-AS1 Gene

C1RL-AS1 (C1RL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C1RL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1RL-AS1 Gene

Genomics for C1RL-AS1 Gene

Regulatory Elements for C1RL-AS1 Gene

Enhancers for C1RL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H006940 1.9 FANTOM5 ENCODE dbSUPER 20.7 -154.4 -154394 25 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZNF384 CHD4 ENSG00000219410 ENSG00000247853 SPSB2 NCAPD2 SCARNA12 ING4 ENSG00000256967 EMG1
GH12H006826 1.3 ENCODE dbSUPER 20.9 -279.4 -279355 3 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 MXD4 NFYC ZNF384 ENSG00000219410 CHD4 ENSG00000247853 P3H3 NCAPD2 ATN1 SPSB2 EMG1 SCARNA12
GH12H006662 1.2 ENCODE 20.9 -444.8 -444826 2 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF384 CHD4 ENSG00000219410 ENSG00000247853 EMG1 NCAPD2 SPSB2 SCARNA12 NOP2 ENSG00000256967
GH12H006344 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -761.4 -761443 3 PKNOX1 ATF1 ARNT SIN3A BRCA1 TCF12 GATA2 ATF7 FOS DEK CHD4 ENSG00000219410 ZNF384 ENSG00000247853 PHB2 LTBR SCNN1A VAMP1 C1RL-AS1 ENSG00000256967
GH12H006610 2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -494.6 -494555 5 HDGF PKNOX1 ARNT SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF766 SP3 ZNF384 ENSG00000219410 ENSG00000247853 CHD4 NCAPD2 SPSB2 LOC100419928 TNFRSF1A EMG1 C1RL-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C1RL-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048392 448 1801 HDGF ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 DEK SP5

Genomic Location for C1RL-AS1 Gene

Chromosome:
12
Start:
7,108,052 bp from pter
End:
7,122,501 bp from pter
Size:
14,450 bases
Orientation:
Plus strand

Genomic View for C1RL-AS1 Gene

Genes around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1RL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1RL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1RL-AS1 Gene

Proteins for C1RL-AS1 Gene

Post-translational modifications for C1RL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1RL-AS1 Gene

Domains & Families for C1RL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1RL-AS1 Gene

Function for C1RL-AS1 Gene

Phenotypes From GWAS Catalog for C1RL-AS1 Gene

Phenotypes for C1RL-AS1 Gene

GenomeRNAi human phenotypes for C1RL-AS1:
genes like me logo Genes that share phenotypes with C1RL-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1RL-AS1 Gene

Localization for C1RL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1RL-AS1 Gene

Pathways & Interactions for C1RL-AS1 Gene

SuperPathways for C1RL-AS1 Gene

No Data Available

Interacting Proteins for C1RL-AS1 Gene

Gene Ontology (GO) - Biological Process for C1RL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1RL-AS1 Gene

Drugs & Compounds for C1RL-AS1 Gene

No Compound Related Data Available

Transcripts for C1RL-AS1 Gene

mRNA/cDNA for C1RL-AS1 Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1RL-AS1 Gene

C1RL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1RL-AS1 Gene

No ASD Table

Relevant External Links for C1RL-AS1 Gene

GeneLoc Exon Structure for
C1RL-AS1
ECgene alternative splicing isoforms for
C1RL-AS1

Expression for C1RL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1RL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1RL-AS1 Gene

This gene is overexpressed in Liver (x4.4).

SOURCE GeneReport for Unigene cluster for C1RL-AS1 Gene:

Hs.744212
genes like me logo Genes that share expression patterns with C1RL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1RL-AS1 Gene

Orthologs for C1RL-AS1 Gene

Evolution for C1RL-AS1 Gene

ENSEMBL:
Gene Tree for C1RL-AS1 (if available)
TreeFam:
Gene Tree for C1RL-AS1 (if available)

No data available for Orthologs for C1RL-AS1 Gene

Paralogs for C1RL-AS1 Gene

No data available for Paralogs for C1RL-AS1 Gene

Variants for C1RL-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1RL-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000269680 -- 7,120,098(+) GAGGG(-/C)AGAGG intron-variant
rs1000470121 -- 7,115,067(+) ACTTT(C/G)CCTGT intron-variant
rs1000528676 -- 7,120,359(+) AGGCC(G/T)GGAGA intron-variant
rs1000595062 -- 7,121,725(+) GGACC(A/G)TCTGG intron-variant, nc-transcript-variant
rs1000801708 -- 7,113,895(+) CACTC(C/T)TCCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1RL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv481255 CNV novel sequence insertion 20440878

Relevant External Links for C1RL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1RL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C1RL-AS1 Gene

Disorders for C1RL-AS1 Gene

Relevant External Links for C1RL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1RL-AS1

No disorders were found for C1RL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1RL-AS1 Gene

Publications for C1RL-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 60

Products for C1RL-AS1 Gene

Sources for C1RL-AS1 Gene

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