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Aliases for C1RL-AS1 Gene

Subcategory (RNA class) for C1RL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C1RL-AS1 Gene

  • C1RL Antisense RNA 1 2 3 5
  • C1RL Antisense RNA 1 (Non-Protein Coding) 2 3
  • ABC12-49244600F4.3 3
  • MATL2963 3

External Ids for C1RL-AS1 Gene

Previous GeneCards Identifiers for C1RL-AS1 Gene

  • GC12P007262
  • GC12P007128
  • GC12P007208
  • GC12P007266
  • GC12P007312

Summaries for C1RL-AS1 Gene

GeneCards Summary for C1RL-AS1 Gene

C1RL-AS1 (C1RL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1RL-AS1 Gene

Genomics for C1RL-AS1 Gene

Regulatory Elements for C1RL-AS1 Gene

Enhancers for C1RL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F006762 1.6 FANTOM5 ENCODE 19.9 -341.6 -341648 7.2 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 ENSG00000219410 ENSG00000247853 NCAPD2 SPSB2 NOP2 ENSG00000256967 C1RL-AS1 GDF3 SCARNA12 TNFRSF1A
GH12F007059 1 ENCODE 22.5 -47.3 -47314 2.4 ARID4B SIN3A YY1 ZNF143 ZNF416 MXD4 REST ZNF518A KAT8 ZNF610 ENSG00000219410 ENSG00000247853 C1RL-AS1 SCARNA12 NCAPD2 SPSB2 C1R C1RL GDF3 LPCAT3
GH12F006213 1.9 FANTOM5 Ensembl ENCODE 10.7 -883.3 -883259 23.4 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000219410 CD9 ENSG00000247853 NCAPD2 SPSB2 GNB3 C1RL-AS1 ENSG00000256967 PLEKHG6 VWF
GH12F006423 1.8 FANTOM5 Ensembl ENCODE 10.7 -682.0 -681990 5.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ENSG00000219410 ENSG00000247853 LOC100419825 LOC100420983 NCAPD2 SPSB2 GNB3 C1RL-AS1 ENSG00000256967 NOP2
GH12F006610 1.8 FANTOM5 Ensembl ENCODE 10.7 -494.5 -494455 5.6 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000219410 PHB2 NOP2 LTBR ENSG00000247853 TAPBPL NCAPD2 SPSB2 LOC105369628 C12orf57
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C1RL-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000086747 348 2001 HDGF ARNT WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 DEK

Genomic Location for C1RL-AS1 Gene

Chromosome:
12
Start:
7,108,052 bp from pter
End:
7,122,501 bp from pter
Size:
14,450 bases
Orientation:
Plus strand

Genomic View for C1RL-AS1 Gene

Genes around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1RL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1RL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1RL-AS1 Gene

Proteins for C1RL-AS1 Gene

Post-translational modifications for C1RL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1RL-AS1 Gene

Domains & Families for C1RL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1RL-AS1 Gene

Function for C1RL-AS1 Gene

Phenotypes for C1RL-AS1 Gene

GenomeRNAi human phenotypes for C1RL-AS1:
genes like me logo Genes that share phenotypes with C1RL-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1RL-AS1 Gene

Localization for C1RL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C1RL-AS1 Gene

Pathways & Interactions for C1RL-AS1 Gene

SuperPathways for C1RL-AS1 Gene

No Data Available

Interacting Proteins for C1RL-AS1 Gene

Gene Ontology (GO) - Biological Process for C1RL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1RL-AS1 Gene

Transcripts for C1RL-AS1 Gene

mRNA/cDNA for C1RL-AS1 Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1RL-AS1 Gene

C1RL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1RL-AS1 Gene

No ASD Table

Relevant External Links for C1RL-AS1 Gene

GeneLoc Exon Structure for
C1RL-AS1
ECgene alternative splicing isoforms for
C1RL-AS1

Expression for C1RL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1RL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1RL-AS1 Gene

This gene is overexpressed in Liver (x4.4).

SOURCE GeneReport for Unigene cluster for C1RL-AS1 Gene:

Hs.744212
genes like me logo Genes that share expression patterns with C1RL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C1RL-AS1 Gene

Orthologs for C1RL-AS1 Gene

Evolution for C1RL-AS1 Gene

ENSEMBL:
Gene Tree for C1RL-AS1 (if available)
TreeFam:
Gene Tree for C1RL-AS1 (if available)

No data available for Orthologs for C1RL-AS1 Gene

Paralogs for C1RL-AS1 Gene

No data available for Paralogs for C1RL-AS1 Gene

Variants for C1RL-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1RL-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1027 -- 7,116,080(+) tcaGC(C/T)GGTAT nc-transcript-variant
rs10743870 -- 7,118,824(+) AAGGA(C/T)ACAGA intron-variant, downstream-variant-500B
rs10842565 -- 7,106,785(+) AGGAA(A/G)CCCAA intron-variant, upstream-variant-2KB
rs10843440 -- 7,110,842(+) CTGAA(G/T)ATGAG intron-variant, upstream-variant-2KB
rs10845008 -- 7,117,093(+) CCAGA(C/T)GGTCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for C1RL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv481255 CNV novel sequence insertion 20440878

Relevant External Links for C1RL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1RL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C1RL-AS1 Gene

Disorders for C1RL-AS1 Gene

Relevant External Links for C1RL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1RL-AS1

No disorders were found for C1RL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1RL-AS1 Gene

Publications for C1RL-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 64

Products for C1RL-AS1 Gene

Sources for C1RL-AS1 Gene

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