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Aliases for C1QTNF9B-AS1 Gene

Subcategory (RNA class) for C1QTNF9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for C1QTNF9B-AS1 Gene

  • C1QTNF9B Antisense RNA 1 2 3 4
  • C1QTNF9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1QTNF9B Antisense Gene Protein 1 3 4
  • PCOTH 3 4
  • Prostate Collagen Triple Helix 2
  • Protein PCOTH 3

External Ids for C1QTNF9B-AS1 Gene

Previous GeneCards Identifiers for C1QTNF9B-AS1 Gene

  • GC13P024465

Summaries for C1QTNF9B-AS1 Gene

GeneCards Summary for C1QTNF9B-AS1 Gene

C1QTNF9B-AS1 (C1QTNF9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

  • May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF9B-AS1 Gene

Genomics for C1QTNF9B-AS1 Gene

Genomic Location for C1QTNF9B-AS1 Gene

Chromosome:
13
Start:
23,888,889 bp from pter
End:
23,897,263 bp from pter
Size:
8,375 bases
Orientation:
Plus strand

Genomic View for C1QTNF9B-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1QTNF9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF9B-AS1 Gene

No data available for Regulatory Elements for C1QTNF9B-AS1 Gene

Proteins for C1QTNF9B-AS1 Gene

  • Protein details for C1QTNF9B-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q58A44-PCOTH_HUMAN
    Recommended name:
    Prostate collagen triple helix protein
    Protein Accession:
    Q58A44

    Protein attributes for C1QTNF9B-AS1 Gene

    Size:
    107 amino acids
    Molecular mass:
    10968 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1QTNF9B-AS1 Gene

Proteomics data for C1QTNF9B-AS1 Gene at MOPED

Post-translational modifications for C1QTNF9B-AS1 Gene

No Post-translational modifications

Other Protein References for C1QTNF9B-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C1QTNF9B-AS1 Gene

Domains & Families for C1QTNF9B-AS1 Gene

Protein Domains for C1QTNF9B-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C1QTNF9B-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QTNF9B-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

Function for C1QTNF9B-AS1 Gene

Molecular function for C1QTNF9B-AS1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway

Gene Ontology (GO) - Molecular Function for C1QTNF9B-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C1QTNF9B-AS1: view

Phenotypes for C1QTNF9B-AS1 Gene

GenomeRNAi human phenotypes for C1QTNF9B-AS1:
genes like me logo Genes that share phenotypes with C1QTNF9B-AS1: view

Animal Model Products

CRISPR Products

miRNA for C1QTNF9B-AS1 Gene

miRTarBase miRNAs that target C1QTNF9B-AS1

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C1QTNF9B-AS1
    • Block miRNA regulation of C1QTNF9B-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for C1QTNF9B-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for C1QTNF9B-AS1 Gene

    Localization for C1QTNF9B-AS1 Gene

    Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

    Cytoplasm.

    Gene Ontology (GO) - Cellular Components for C1QTNF9B-AS1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0005737 cytoplasm IEA --
    genes like me logo Genes that share ontologies with C1QTNF9B-AS1: view

    No data available for Subcellular locations from COMPARTMENTS for C1QTNF9B-AS1 Gene

    Pathways & Interactions for C1QTNF9B-AS1 Gene

    SuperPathways for C1QTNF9B-AS1 Gene

    No Data Available

    Interacting Proteins for C1QTNF9B-AS1 Gene

    Selected Interacting proteins: Q58A44-PCOTH_HUMAN for C1QTNF9B-AS1 Gene via UniProtKB

    Symbol External ID(s) Details
    PSMA3

    Gene Ontology (GO) - Biological Process for C1QTNF9B-AS1 Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for C1QTNF9B-AS1 Gene

    Drugs & Compounds for C1QTNF9B-AS1 Gene

    No Compound Related Data Available

    Transcripts for C1QTNF9B-AS1 Gene

    mRNA/cDNA for C1QTNF9B-AS1 Gene

    (2) REFSEQ mRNAs :
    (6) Additional mRNA sequences :
    (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for C1QTNF9B-AS1 Gene

    C1QTNF9B antisense RNA 1:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate C1QTNF9B-AS1
      • Block miRNA regulation of C1QTNF9B-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for C1QTNF9B-AS1

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF9B-AS1 Gene

      No ASD Table

      Relevant External Links for C1QTNF9B-AS1 Gene

      GeneLoc Exon Structure for
      C1QTNF9B-AS1
      ECgene alternative splicing isoforms for
      C1QTNF9B-AS1

      Expression for C1QTNF9B-AS1 Gene

      mRNA expression in normal human tissues for C1QTNF9B-AS1 Gene

      mRNA differential expression in normal tissues according to GTEx for C1QTNF9B-AS1 Gene

      This gene is overexpressed in Testis (x10.7) and Prostate (x6.8).

      SOURCE GeneReport for Unigene cluster for C1QTNF9B-AS1 Gene Hs.642624

      mRNA Expression by UniProt/SwissProt for C1QTNF9B-AS1 Gene

      Q58A44-PCOTH_HUMAN
      Tissue specificity: Expressed in prostate and testis. Weakly or not expressed in other tissues. Overexpressed in prostate cancers.
      genes like me logo Genes that share expression patterns with C1QTNF9B-AS1: view

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for C1QTNF9B-AS1 Gene

      Orthologs for C1QTNF9B-AS1 Gene

      This gene was present in the common ancestor of human and mouse.

      Orthologs for C1QTNF9B-AS1 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia C1QTNF9B-AS1 35
      • 99.38 (n)
      • 99.07 (a)
      mouse
      (Mus musculus)
      Mammalia Gm20017 16
      Species with no ortholog for C1QTNF9B-AS1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for C1QTNF9B-AS1 Gene

      ENSEMBL:
      Gene Tree for C1QTNF9B-AS1 (if available)
      TreeFam:
      Gene Tree for C1QTNF9B-AS1 (if available)

      Paralogs for C1QTNF9B-AS1 Gene

      (1) SIMAP similar genes for C1QTNF9B-AS1 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with C1QTNF9B-AS1: view

      No data available for Paralogs for C1QTNF9B-AS1 Gene

      Variants for C1QTNF9B-AS1 Gene

      Structural Variations from Database of Genomic Variants (DGV) for C1QTNF9B-AS1 Gene

      Variant ID Type Subtype PubMed ID
      esv2422502 CNV Duplication 17116639
      esv2747122 CNV Deletion 23290073
      esv5325 CNV Complex 18987735
      nsv455837 CNV Gain 19166990
      nsv525965 CNV Gain 19592680
      dgv1561n71 CNV Gain 21882294
      esv2751136 CNV Loss 17911159
      dgv1565n71 CNV Gain 21882294
      esv2747134 CNV Deletion 23290073
      nsv832566 CNV Gain 17160897

      Relevant External Links for C1QTNF9B-AS1 Gene

      HapMap Linkage Disequilibrium report
      C1QTNF9B-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for C1QTNF9B-AS1 Gene

      Disorders for C1QTNF9B-AS1 Gene

      Relevant External Links for C1QTNF9B-AS1

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      C1QTNF9B-AS1
      genes like me logo Genes that share disorders with C1QTNF9B-AS1: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF9B-AS1 Gene

      Publications for C1QTNF9B-AS1 Gene

      1. PCOTH, a novel gene overexpressed in prostate cancers, promotes prostate cancer cell growth through phosphorylation of oncoprotein TAF-Ibeta/SET. (PMID: 15930275) Anazawa Y. … Nakamura Y. (Cancer Res. 2005) 2 23 67
      2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
      3. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. (PMID: 21640322) Shi Y. … Yang Z. (Am. J. Hum. Genet. 2011) 67
      4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
      5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

      Products for C1QTNF9B-AS1 Gene

      Sources for C1QTNF9B-AS1 Gene

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