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Aliases for C1QTNF9B-AS1 Gene

Subcategory (RNA class) for C1QTNF9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for C1QTNF9B-AS1 Gene

  • C1QTNF9B Antisense RNA 1 2 3 4 5
  • C1QTNF9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1QTNF9B Antisense Gene Protein 1 3 4
  • PCOTH 3 4
  • Prostate Collagen Triple Helix 2
  • Protein PCOTH 3

External Ids for C1QTNF9B-AS1 Gene

Previous GeneCards Identifiers for C1QTNF9B-AS1 Gene

  • GC13P024465

Summaries for C1QTNF9B-AS1 Gene

GeneCards Summary for C1QTNF9B-AS1 Gene

C1QTNF9B-AS1 (C1QTNF9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

  • May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF9B-AS1 Gene

Genomics for C1QTNF9B-AS1 Gene

Regulatory Elements for C1QTNF9B-AS1 Gene

Enhancers for C1QTNF9B-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C1QTNF9B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C1QTNF9B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C1QTNF9B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1QTNF9B-AS1 Gene

23,888,889 bp from pter
23,897,263 bp from pter
8,375 bases
Plus strand

Genomic View for C1QTNF9B-AS1 Gene

Genes around C1QTNF9B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF9B-AS1 Gene

Proteins for C1QTNF9B-AS1 Gene

  • Protein details for C1QTNF9B-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Prostate collagen triple helix protein
    Protein Accession:

    Protein attributes for C1QTNF9B-AS1 Gene

    107 amino acids
    Molecular mass:
    10968 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1QTNF9B-AS1 Gene

Proteomics data for C1QTNF9B-AS1 Gene at MOPED

Post-translational modifications for C1QTNF9B-AS1 Gene

No Post-translational modifications

Other Protein References for C1QTNF9B-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C1QTNF9B-AS1 Gene

Domains & Families for C1QTNF9B-AS1 Gene

Protein Domains for C1QTNF9B-AS1 Gene


Suggested Antigen Peptide Sequences for C1QTNF9B-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QTNF9B-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

Function for C1QTNF9B-AS1 Gene

Molecular function for C1QTNF9B-AS1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway.

Phenotypes for C1QTNF9B-AS1 Gene

GenomeRNAi human phenotypes for C1QTNF9B-AS1:
genes like me logo Genes that share phenotypes with C1QTNF9B-AS1: view

Animal Model Products

CRISPR Products

miRNA for C1QTNF9B-AS1 Gene

miRTarBase miRNAs that target C1QTNF9B-AS1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1QTNF9B-AS1 Gene

Localization for C1QTNF9B-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene


Subcellular locations from

Jensen Localization Image for C1QTNF9B-AS1 Gene COMPARTMENTS Subcellular localization image for C1QTNF9B-AS1 gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for C1QTNF9B-AS1 Gene

Pathways & Interactions for C1QTNF9B-AS1 Gene

SuperPathways for C1QTNF9B-AS1 Gene

No Data Available

Interacting Proteins for C1QTNF9B-AS1 Gene

Selected Interacting proteins: Q58A44-PCOTH_HUMAN for C1QTNF9B-AS1 Gene via UniProtKB

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for C1QTNF9B-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for C1QTNF9B-AS1 Gene

Drugs & Compounds for C1QTNF9B-AS1 Gene

No Compound Related Data Available

Transcripts for C1QTNF9B-AS1 Gene

mRNA/cDNA for C1QTNF9B-AS1 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1QTNF9B-AS1 Gene

C1QTNF9B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF9B-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF9B-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C1QTNF9B-AS1 Gene

mRNA expression in normal human tissues for C1QTNF9B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF9B-AS1 Gene

This gene is overexpressed in Testis (x10.7) and Prostate (x6.8).

SOURCE GeneReport for Unigene cluster for C1QTNF9B-AS1 Gene Hs.642624

mRNA Expression by UniProt/SwissProt for C1QTNF9B-AS1 Gene

Tissue specificity: Expressed in prostate and testis. Weakly or not expressed in other tissues. Overexpressed in prostate cancers.
genes like me logo Genes that share expression patterns with C1QTNF9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for C1QTNF9B-AS1 Gene

Orthologs for C1QTNF9B-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1QTNF9B-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1QTNF9B-AS1 35
  • 99.38 (n)
  • 99.07 (a)
Species with no ortholog for C1QTNF9B-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1QTNF9B-AS1 Gene

Gene Tree for C1QTNF9B-AS1 (if available)
Gene Tree for C1QTNF9B-AS1 (if available)

Paralogs for C1QTNF9B-AS1 Gene

(1) SIMAP similar genes for C1QTNF9B-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C1QTNF9B-AS1: view

No data available for Paralogs for C1QTNF9B-AS1 Gene

Variants for C1QTNF9B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF9B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422502 CNV Duplication 17116639
esv2747122 CNV Deletion 23290073
esv5325 CNV Complex 18987735
nsv455837 CNV Gain 19166990
nsv525965 CNV Gain 19592680
dgv1561n71 CNV Gain 21882294
esv2751136 CNV Loss 17911159
dgv1565n71 CNV Gain 21882294
esv2747134 CNV Deletion 23290073
nsv832566 CNV Gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for C1QTNF9B-AS1 Gene

Disorders for C1QTNF9B-AS1 Gene

Relevant External Links for C1QTNF9B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C1QTNF9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF9B-AS1 Gene

Publications for C1QTNF9B-AS1 Gene

  1. PCOTH, a novel gene overexpressed in prostate cancers, promotes prostate cancer cell growth through phosphorylation of oncoprotein TAF-Ibeta/SET. (PMID: 15930275) Anazawa Y. … Nakamura Y. (Cancer Res. 2005) 2 3 4 23 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. (PMID: 21640322) Shi Y. … Yang Z. (Am. J. Hum. Genet. 2011) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C1QTNF9B-AS1 Gene

Sources for C1QTNF9B-AS1 Gene