C1QTNF9B-AS1 Gene
RNA gene GIFtS: 33
GCID: GC13P024465
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C1QTNF9B antisense RNA 1(Previous name: C1QTNF9B antisense RNA 1 (non-protein coding) )
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Aliases
for C1QTNF9B-AS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): non-coding RNA
Quality score for this RNA gene is 3
| Aliases |
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| C1QTNF9B Antisense RNA 11 2 | | PCOTH1 2 | | C1QTNF9B Antisense RNA 1 (Non-Protein Coding)1 2 | | Prostate Collagen Triple Helix Protein2 | | Protein PCOTH2 |
Export aliases for C1QTNF9B-AS1 gene to outside databases |
Summaries
for C1QTNF9B-AS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C1QTNF9B-AS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000013.10 NC_018924.1 NT_024524.14
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for C1QTNF9B-AS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for C1QTNF9B-AS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QTNF9B-AS1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 13q12 Ensembl cytogenetic band: 13q12.12 HGNC cytogenetic band: 13q12.12C1QTNF9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13P024465: view genomic region
(about GC identifiers)
Start:
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24,463,028 bp from pter |
End:
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24,471,402 bp from pter |
Size:
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8,375 bases |
Orientation:
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plus strand |
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Proteins
for C1QTNF9B-AS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: I3L0F1 (See
protein sequence)Recommended Name: Protein C1QTNF9B-AS1 Size: 100 amino acids; 10122 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataC1QTNF9B-AS1 Protein expression data from MOPED and PaxDb: --
REFSEQ proteins (2 alternative transcripts):
NP_001014442.2 NP_001129288.1
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0005737 | cytoplasm |
IEA | -- |
C1QTNF9B-AS1 for ontologies About GeneDecksing
C1QTNF9B-AS1 Antibody Products:
Assay Products for C1QTNF9B-AS1: |
Protein
Domains /
Families
for C1QTNF9B-AS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: I3L0F1 |
Function
for C1QTNF9B-AS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for C1QTNF9B-AS1 | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C1QTNF9B-AS1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C1QTNF9B-AS1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9B-AS1 |
|
Pathways & Interactions
for C1QTNF9B-AS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1QTNF9B-AS1
|
Drugs & Compounds
for C1QTNF9B-AS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C1QTNF9B-AS1
Search CenterWatch for drugs/clinical trials and news about C1QTNF9B-AS1
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Transcripts
for C1QTNF9B-AS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C1QTNF9B-AS1 gene (2 alternative transcripts): NM_001014442.2 NM_001135816.1 Unigene Cluster for C1QTNF9B-AS1: C1QTNF9B antisense RNA 1 Hs.642624 [show with all ESTs]Unigene Representative Sequence: BG0328393 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000382133(uc001uoy.3) ENST00000417034 ENST00000435039(uc009zzx.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for C1QTNF9B-AS1 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C1QTNF9B-AS1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C1QTNF9B-AS1 |
Additional cDNA sequence: AB113650.1 BC015452.1 BC073902.1 BC132842.1 BC132846.1 BC142999.1 4 DOTS entries: DT.309897 DT.101964649 DT.120769735 DT.99990291
GeneLoc Exon Structure
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Expression
for C1QTNF9B-AS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for C1QTNF9B-AS1:none
C1QTNF9B-AS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTTCCTGGG
About this image
Genevestigator expression for C1QTNF9B-AS1
SOURCE GeneReport for Unigene cluster: Hs.642624
SABiosciences Custom PCR Arrays for C1QTNF9B-AS1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C1QTNF9B-AS1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat C1QTNF9B-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C1QTNF9B-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1QTNF9B-AS1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9B-AS1 |
Orthologs
for C1QTNF9B-AS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of human and mouse.
Orthologs for C1QTNF9B-AS1 gene from 1/3 species (see all 3) About this table
ENSEMBL Gene Tree for C1QTNF9B-AS1 (if available)
TreeFam Gene Tree for C1QTNF9B-AS1 (if available) |
Paralogs
for C1QTNF9B-AS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for C1QTNF9B-AS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for C1QTNF9B-AS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
C1QTNF9B-AS1 for disorders About GeneDecksing
2  diseases for C1QTNF9B-AS1: About MalaCardsprostatitis prostate cancer
Export disorders for C1QTNF9B-AS1 gene to outside databases
|
Publications
for C1QTNF9B-AS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C1QTNF9B-AS1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C1QTNF9B-AS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- PCOTH, a novel gene overexpressed in prostate cancers, promotes prostate cancer cell growth through phosphorylation of oncoprotein TAF-Ibeta/SET. (PubMed id 15930275)1, 3, 9 Anazawa Y.... Nakamura Y. (2005)
- Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. (PubMed id 21640322)1 Shi Y....Yang Z. (2011)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for C1QTNF9B-AS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing C1QTNF9B-AS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing C1QTNF9B-AS1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C1QTNF9B-AS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
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About This Section
| Patent Information for C1QTNF9B-AS1 gene:
Search GeneIP for patents involving C1QTNF9B-AS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C1QTNF9B-AS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for C1QTNF9B-AS1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for C1QTNF9B-AS1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C1QTNF9B-AS1 | | | OriGene Protein Over-expression Lysate for C1QTNF9B-AS1 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for C1QTNF9B-AS1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C1QTNF9B-AS1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for C1QTNF9B-AS1 | | OriGene Custom Protein Services for C1QTNF9B-AS1 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C1QTNF9B-AS1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C1QTNF9B-AS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QTNF9B-AS1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat C1QTNF9B-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1QTNF9B-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C1QTNF9B-AS1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9B-AS1 |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C1QTNF9B-AS1 |
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