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Aliases for C1QTNF9B-AS1 Gene

Subcategory (RNA class) for C1QTNF9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for C1QTNF9B-AS1 Gene

  • C1QTNF9B Antisense RNA 1 2 3 4 5
  • C1QTNF9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1QTNF9B Antisense Gene Protein 1 3 4
  • PCOTH 3 4
  • Prostate Collagen Triple Helix Protein 3
  • Prostate Collagen Triple Helix 2
  • Protein PCOTH 3

External Ids for C1QTNF9B-AS1 Gene

Previous GeneCards Identifiers for C1QTNF9B-AS1 Gene

  • GC13P024465

Summaries for C1QTNF9B-AS1 Gene

GeneCards Summary for C1QTNF9B-AS1 Gene

C1QTNF9B-AS1 (C1QTNF9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

  • May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF9B-AS1 Gene

Genomics for C1QTNF9B-AS1 Gene

Regulatory Elements for C1QTNF9B-AS1 Gene

Enhancers for C1QTNF9B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F023866 1.1 FANTOM5 Ensembl ENCODE 11.9 -20.9 -20948 3.3 KLF1 CBX3 TAL1 ZNF316 FOS NFE2 E2F6 MAFK L3MBTL2 RNF2 C1QTNF9 MIPEP C1QTNF9B-AS1 C1QTNF9B TNFRSF19 MTCO3P2
GH13F023468 1.2 Ensembl ENCODE 11.7 -418.7 -418740 2.6 SOX13 RFX1 BHLHE40 TEAD4 REST FEZF1 ZIC2 JUND SMARCA4 SCRT2 C1QTNF9B C1QTNF9B-AS1 MIPEP SACS TNFRSF19 LINC00327 LINC00352
GH13F023465 0.2 ENCODE 11.7 -421.9 -421900 2.0 PKNOX1 ZNF76 ARID4B SIN3A ZNF48 ZNF2 RAD21 EGR1 ETV6 CREM C1QTNF9B C1QTNF9B-AS1 MIPEP TNFRSF19 LINC00327 LINC00352
GH13F023504 0.9 Ensembl ENCODE 11.3 -382.5 -382480 3.7 PKNOX1 INSM2 FEZF1 CEBPG ZIC2 RARA HIC1 GLIS2 ZNF366 POLR2A C1QTNF9B C1QTNF9B-AS1 MIPEP TNFRSF19 LINC00352 PIR60894
GH13F023461 0.2 Ensembl 11.3 -427.1 -427089 0.4 ZNF664 SACS C1QTNF9B C1QTNF9B-AS1 MIPEP TNFRSF19 LINC00327
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C1QTNF9B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C1QTNF9B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000666353 311 2001 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 FOS SP3

Genomic Location for C1QTNF9B-AS1 Gene

Chromosome:
13
Start:
23,888,889 bp from pter
End:
23,897,263 bp from pter
Size:
8,375 bases
Orientation:
Plus strand

Genomic View for C1QTNF9B-AS1 Gene

Genes around C1QTNF9B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF9B-AS1 Gene

Proteins for C1QTNF9B-AS1 Gene

  • Protein details for C1QTNF9B-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q58A44-PCOTH_HUMAN
    Recommended name:
    Prostate collagen triple helix protein
    Protein Accession:
    Q58A44

    Protein attributes for C1QTNF9B-AS1 Gene

    Size:
    107 amino acids
    Molecular mass:
    10968 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1QTNF9B-AS1 Gene

Post-translational modifications for C1QTNF9B-AS1 Gene

No Post-translational modifications

Other Protein References for C1QTNF9B-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C1QTNF9B-AS1 Gene

Domains & Families for C1QTNF9B-AS1 Gene

Protein Domains for C1QTNF9B-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C1QTNF9B-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QTNF9B-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

Function for C1QTNF9B-AS1 Gene

Molecular function for C1QTNF9B-AS1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in growth and survival of prostate cancer cells through the TAF-Ibeta pathway.

Gene Ontology (GO) - Molecular Function for C1QTNF9B-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C1QTNF9B-AS1: view

Phenotypes for C1QTNF9B-AS1 Gene

GenomeRNAi human phenotypes for C1QTNF9B-AS1:
genes like me logo Genes that share phenotypes with C1QTNF9B-AS1: view

Animal Model Products

miRNA for C1QTNF9B-AS1 Gene

miRTarBase miRNAs that target C1QTNF9B-AS1

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1QTNF9B-AS1 Gene

Localization for C1QTNF9B-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF9B-AS1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1QTNF9B-AS1 Gene COMPARTMENTS Subcellular localization image for C1QTNF9B-AS1 gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
extracellular 1

Gene Ontology (GO) - Cellular Components for C1QTNF9B-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with C1QTNF9B-AS1: view

Pathways & Interactions for C1QTNF9B-AS1 Gene

SuperPathways for C1QTNF9B-AS1 Gene

No Data Available

Interacting Proteins for C1QTNF9B-AS1 Gene

Selected Interacting proteins: Q58A44-PCOTH_HUMAN for C1QTNF9B-AS1 Gene via UniProtKB IID

Symbol External ID(s) Details
PSMA3

Gene Ontology (GO) - Biological Process for C1QTNF9B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF9B-AS1 Gene

Transcripts for C1QTNF9B-AS1 Gene

mRNA/cDNA for C1QTNF9B-AS1 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1QTNF9B-AS1 Gene

C1QTNF9B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF9B-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF9B-AS1 Gene

GeneLoc Exon Structure for
C1QTNF9B-AS1
ECgene alternative splicing isoforms for
C1QTNF9B-AS1

Expression for C1QTNF9B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1QTNF9B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF9B-AS1 Gene

This gene is overexpressed in Testis (x10.7) and Prostate (x6.8).

SOURCE GeneReport for Unigene cluster for C1QTNF9B-AS1 Gene:

Hs.642624

mRNA Expression by UniProt/SwissProt for C1QTNF9B-AS1 Gene:

Q58A44-PCOTH_HUMAN
Tissue specificity: Expressed in prostate and testis. Weakly or not expressed in other tissues. Overexpressed in prostate cancers.
genes like me logo Genes that share expression patterns with C1QTNF9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for C1QTNF9B-AS1 Gene

Orthologs for C1QTNF9B-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1QTNF9B-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF9B-AS1 34
  • 99.38 (n)
Species where no ortholog for C1QTNF9B-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1QTNF9B-AS1 Gene

ENSEMBL:
Gene Tree for C1QTNF9B-AS1 (if available)
TreeFam:
Gene Tree for C1QTNF9B-AS1 (if available)

Paralogs for C1QTNF9B-AS1 Gene

(1) SIMAP similar genes for C1QTNF9B-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C1QTNF9B-AS1: view

No data available for Paralogs for C1QTNF9B-AS1 Gene

Variants for C1QTNF9B-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF9B-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111495711 -- 23,891,083(+) TAAAT(C/T)AGAAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111562548 -- 23,890,829(+) TTTTT(A/T)AAAAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111588986 -- 23,892,461(+) ATCAG(C/G)CTAGG intron-variant, downstream-variant-500B
rs111595693 -- 23,888,375(+) AATAC(A/G)GTATA intron-variant, upstream-variant-2KB
rs111828116 -- 23,892,111(+) CCCTT(A/G)TGAAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF9B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
esv2422502 CNV duplication 17116639
esv2751136 CNV loss 17911159
esv3580576 CNV loss 25503493
esv3631536 CNV gain 21293372
esv3892311 CNV gain 25118596
esv5325 OTHER complex 18987735
nsv1041095 CNV loss 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781
nsv832566 CNV gain 17160897
nsv983560 CNV duplication 23825009

Relevant External Links for C1QTNF9B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF9B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C1QTNF9B-AS1 Gene

Disorders for C1QTNF9B-AS1 Gene

Relevant External Links for C1QTNF9B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1QTNF9B-AS1

No disorders were found for C1QTNF9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF9B-AS1 Gene

Publications for C1QTNF9B-AS1 Gene

  1. PCOTH, a novel gene overexpressed in prostate cancers, promotes prostate cancer cell growth through phosphorylation of oncoprotein TAF-Ibeta/SET. (PMID: 15930275) Anazawa Y. … Nakamura Y. (Cancer Res. 2005) 2 3 4 22 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. (PMID: 21640322) Shi Y. … Yang Z. (Am. J. Hum. Genet. 2011) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for C1QTNF9B-AS1 Gene

Sources for C1QTNF9B-AS1 Gene

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