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Aliases for C1QTNF9B Gene

Aliases for C1QTNF9B Gene

  • C1q And Tumor Necrosis Factor Related Protein 9B 2 3 5
  • C1q/TNF-Related Protein 9B 3 4
  • CTRP9B 3 4
  • Complement C1q And Tumor Necrosis Factor-Related Protein 9-Like 4
  • Complement C1q And Tumor Necrosis Factor-Related Protein 9B 3
  • Collagen Triple Helix Repeat-Containing 3

External Ids for C1QTNF9B Gene

Previous GeneCards Identifiers for C1QTNF9B Gene

  • GC13M024462
  • GC13M005276

Summaries for C1QTNF9B Gene

GeneCards Summary for C1QTNF9B Gene

C1QTNF9B (C1q And Tumor Necrosis Factor Related Protein 9B) is a Protein Coding gene. An important paralog of this gene is C1QTNF9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF9B Gene

Genomics for C1QTNF9B Gene

Regulatory Elements for C1QTNF9B Gene

Enhancers for C1QTNF9B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F023866 1.3 FANTOM5 Ensembl ENCODE 11.9 +34.7 34714 3.3 KLF1 CBX3 TAL1 ZNF316 FOS NFE2 E2F6 MAFK L3MBTL2 RNF2 C1QTNF9 MIPEP C1QTNF9B-AS1 C1QTNF9B TNFRSF19 MTCO3P2
GH13F023608 1.3 Ensembl ENCODE 11.2 +292.8 292834 3.6 PKNOX1 ATF1 ARID4B FEZF1 ZNF48 YY1 JUNB REST PPARG KAT8 C1QTNF9B-AS1 MIPEP C1QTNF9B TNFRSF19 LOC105370114
GH13F023504 1.1 Ensembl ENCODE 11.3 +396.2 396246 3.7 PKNOX1 INSM2 FEZF1 CEBPG ZIC2 RARA HIC1 GLIS2 ZNF366 POLR2A C1QTNF9B C1QTNF9B-AS1 MIPEP TNFRSF19 LINC00352 PIR60894
GH13F023921 0.9 Ensembl ENCODE 13.3 -19.4 -19351 1.8 CTCF ZNF654 TRIM22 DPF2 RAD21 CTBP1 POU5F1 SMC3 FOS C1QTNF9B ANKRD20A19P PIR57853
GH13F023372 1 ENCODE 11.1 +526.5 526486 8.3 PKNOX1 ATF1 CREB3L1 SIN3A ZNF48 ZNF2 GLIS2 CBX5 ZNF143 ZNF207 C1QTNF9B-AS1 MIPEP C1QTNF9B SACS RPLP1P13 SACS-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1QTNF9B on UCSC Golden Path with GeneCards custom track

Genomic Location for C1QTNF9B Gene

Chromosome:
13
Start:
23,891,099 bp from pter
End:
23,902,655 bp from pter
Size:
11,557 bases
Orientation:
Minus strand

Genomic View for C1QTNF9B Gene

Genes around C1QTNF9B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF9B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF9B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF9B Gene

Proteins for C1QTNF9B Gene

  • Protein details for C1QTNF9B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B2RNN3-C1T9B_HUMAN
    Recommended name:
    Complement C1q and tumor necrosis factor-related protein 9B
    Protein Accession:
    B2RNN3
    Secondary Accessions:
    • A2A3T6
    • B9EH31
    • Q0VGC5
    • Q5VX65
    • Q5VX66
    • Q8IUU4

    Protein attributes for C1QTNF9B Gene

    Size:
    333 amino acids
    Molecular mass:
    34713 Da
    Quaternary structure:
    • Interacts with CTRP9A and ADIPOQ. Forms heterotrimers and heterooligomeric complexes with CTRP9A.

    Alternative splice isoforms for C1QTNF9B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C1QTNF9B Gene

Post-translational modifications for C1QTNF9B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1QTNF9B Gene

No data available for DME Specific Peptides for C1QTNF9B Gene

Domains & Families for C1QTNF9B Gene

Gene Families for C1QTNF9B Gene

Protein Domains for C1QTNF9B Gene

Suggested Antigen Peptide Sequences for C1QTNF9B Gene

Graphical View of Domain Structure for InterPro Entry

B2RNN3

UniProtKB/Swiss-Prot:

C1T9B_HUMAN :
  • Contains 1 C1q domain.
Domain:
  • Contains 1 C1q domain.
  • Contains 3 collagen-like domains.
genes like me logo Genes that share domains with C1QTNF9B: view

Function for C1QTNF9B Gene

Gene Ontology (GO) - Molecular Function for C1QTNF9B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19666007
genes like me logo Genes that share ontologies with C1QTNF9B: view
genes like me logo Genes that share phenotypes with C1QTNF9B: view

Animal Models for C1QTNF9B Gene

MGI Knock Outs for C1QTNF9B:

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF9B Gene

Localization for C1QTNF9B Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF9B Gene

Secreted. Note=Heteromeric complex formation with CTRP9A or ADIPOQ is required for secretion, otherwise, it is retained in the endoplasmic reticulum.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1QTNF9B gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for C1QTNF9B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005581 collagen trimer IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with C1QTNF9B: view

Pathways & Interactions for C1QTNF9B Gene

SuperPathways for C1QTNF9B Gene

No Data Available

Interacting Proteins for C1QTNF9B Gene

Gene Ontology (GO) - Biological Process for C1QTNF9B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF9B Gene

Transcripts for C1QTNF9B Gene

mRNA/cDNA for C1QTNF9B Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1QTNF9B Gene

C1q and tumor necrosis factor related protein 9B:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF9B Gene

No ASD Table

Relevant External Links for C1QTNF9B Gene

GeneLoc Exon Structure for
C1QTNF9B
ECgene alternative splicing isoforms for
C1QTNF9B

Expression for C1QTNF9B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1QTNF9B Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF9B Gene

This gene is overexpressed in Testis (x9.8) and Prostate (x6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C1QTNF9B Gene



NURSA nuclear receptor signaling pathways regulating expression of C1QTNF9B Gene:

C1QTNF9B

SOURCE GeneReport for Unigene cluster for C1QTNF9B Gene:

Hs.740810

mRNA Expression by UniProt/SwissProt for C1QTNF9B Gene:

B2RNN3-C1T9B_HUMAN
Tissue specificity: Expressed at low levels. Not expressed in adipose tissues.
genes like me logo Genes that share expression patterns with C1QTNF9B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues and Protein tissue co-expression partners for C1QTNF9B Gene

Orthologs for C1QTNF9B Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF9B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF9B 34
  • 98.29 (n)
-- 35
  • 97 (a)
ManyToMany
-- 35
  • 96 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 89 (a)
OneToMany
C1QTNF9 34
  • 86.59 (n)
rat
(Rattus norvegicus)
Mammalia C1qtnf9 34
  • 82.48 (n)
mouse
(Mus musculus)
Mammalia C1qtnf9 34 16 35
  • 81.68 (n)
cow
(Bos Taurus)
Mammalia C1QTNF9 34 35
  • 80.98 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 62 (a)
OneToMany
chicken
(Gallus gallus)
Aves C1QTNF9 34
  • 66.77 (n)
-- 35
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 61 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii c1qtnf9 35
  • 54 (a)
OneToMany
Species where no ortholog for C1QTNF9B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1QTNF9B Gene

ENSEMBL:
Gene Tree for C1QTNF9B (if available)
TreeFam:
Gene Tree for C1QTNF9B (if available)

Paralogs for C1QTNF9B Gene

Variants for C1QTNF9B Gene

Sequence variations from dbSNP and Humsavar for C1QTNF9B Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111495711 -- 23,891,083(+) TAAAT(C/T)AGAAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111562548 -- 23,890,829(+) TTTTT(A/T)AAAAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111568876 -- 23,897,071(+) GCCTC(C/T)GTTCT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111588986 -- 23,892,461(+) ATCAG(C/G)CTAGG intron-variant, downstream-variant-500B
rs111654463 -- 23,897,076(+) CGTTC(C/T)GTGCA intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF9B Gene

Variant ID Type Subtype PubMed ID
esv3631536 CNV gain 21293372
esv3892311 CNV gain 25118596
esv5325 OTHER complex 18987735
nsv1041095 CNV loss 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781
nsv832566 CNV gain 17160897
nsv983560 CNV duplication 23825009
esv3580576 CNV loss 25503493
esv2751136 CNV loss 17911159
esv2422502 CNV duplication 17116639
dgv3084n54 CNV gain 21841781
dgv1615n100 CNV gain 25217958

Variation tolerance for C1QTNF9B Gene

Residual Variation Intolerance Score: 94.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.72; 93.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1QTNF9B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF9B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF9B Gene

Disorders for C1QTNF9B Gene

Relevant External Links for C1QTNF9B

Genetic Association Database (GAD)
C1QTNF9B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1QTNF9B

No disorders were found for C1QTNF9B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF9B Gene

Publications for C1QTNF9B Gene

  1. CTRP8 and CTRP9B are novel proteins that hetero-oligomerize with C1q/TNF family members. (PMID: 19666007) Peterson J.M. … Wong G.W. (Biochem. Biophys. Res. Commun. 2009) 3 4 64
  2. C1q and its growing family. (PMID: 17544811) Ghai R. … Kishore U. (Immunobiology 2007) 2 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3 64
  5. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. (PMID: 21640322) Shi Y. … Yang Z. (Am. J. Hum. Genet. 2011) 3 64

Products for C1QTNF9B Gene

Sources for C1QTNF9B Gene

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