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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

C1QTNF9 Gene

protein-coding   GIFtS: 44
GCID: GC13P024881

C1q And Tumor Necrosis Factor Related Protein 9

  Search for C1QTNF9
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
C1q And Tumor Necrosis Factor Related Protein 91 2     CTRP92
Complement C1q And Tumor Necrosis Factor-Related Protein 92 3     Complement C1q And Tumor Necrosis Factor-Related Protein 9A2
C1QTNF9A2 3     Complement C1q Tumor Necrosis Factor-Related Protein 92
AQL12     Complement C1q Tumor Necrosis Factor-Related Protein 9A2

External Ids:    HGNC: 287321   Entrez Gene: 3388722   Ensembl: ENSG000002406547   OMIM: 6142855   UniProtKB: P0C8623   

Export aliases for C1QTNF9 gene to outside databases

Previous GC identifers: GC13P023779 GC13P005695


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for C1QTNF9 Gene: 
C1QTNF9 (C1q and tumor necrosis factor related protein 9) is a protein-coding gene. GO annotations related to this gene include hormone activity. An important paralog of this gene is C1QTNF6.

UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000013.10  NT_024524.14  NC_018924.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the C1QTNF9 gene promoter:
         AhR   Lmo2   E2F-2   STAT5A   GATA-2   Arnt   PPAR-alpha   E2F-1   Ik-2   E2F   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC1QTNF9 promoter sequence
   Search SABiosciences Chromatin IP Primers for C1QTNF9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QTNF9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q12.12   Ensembl cytogenetic band:  13q12.12   HGNC cytogenetic band: 13q12.12

C1QTNF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QTNF9 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P024881:  view genomic region     (about GC identifiers)

Start:
24,881,304 bp from pter      End:
24,896,673 bp from pter
Size:
15,370 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862 (See protein sequence)
Recommended Name: Complement C1q and tumor necrosis factor-related protein 9A precursor  
Size: 333 amino acids; 34681 Da
Subunit: Multimers (predominantly trimers). Interacts with ADIPOQ via the C1q domain to form a heterotrimeric
complex (By similarity). Interacts with CTRP9B. Forms heterotrimers and heterooligomeric complexes with CTRP9B
Subcellular location: Secreted (By similarity)
Secondary accessions: A2A3T6 Q0VGC5 Q5VX65 Q5VX66 Q8IUU4

Explore the universe of human proteins at neXtProt for C1QTNF9: NX_P0C862

Explore proteomics data for C1QTNF9 at MOPED 

C1QTNF9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

C1QTNF9 Protein Expression

REFSEQ proteins: NP_848635.2  
ENSEMBL proteins: 
 ENSP00000371503   ENSP00000333737  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005581collagen IEA--

C1QTNF9 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
3 InterPro protein domains:
 IPR008983 Tumour_necrosis_fac-like_dom
 IPR008160 Collagen
 IPR001073 C1q

Graphical View of Domain Structure for InterPro Entry P0C862

ProtoNet protein and cluster: P0C862

UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
Similarity: Contains 1 C1q domain
Similarity: Contains 3 collagen-like domains


C1QTNF9 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: C1T9A_HUMAN, P0C862
Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005179hormone activity IEA--
GO:0005515protein binding ----
     
C1QTNF9 for ontologies           About GeneDecksing


Phenotypes:
     1 MGI phenotypic allele for C1qtnf9 (no phenotypes)

C1QTNF9 for phenotypes           About GeneDecksing

Animal Models:
     MGI mouse knock-out C1qtnf9tm1Lex for C1QTNF9

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section




Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1QTNF9

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for C1QTNF9 (C1T9A)

Search CenterWatch for drugs/clinical trials and news about C1QTNF9 / C1T9A

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for C1QTNF9 gene: 
NM_178540.3  

Unigene Cluster for C1QTNF9:

C1q and tumor necrosis factor related protein 9
Hs.362854  [show with all ESTs]
Unigene Representative Sequence: NM_178540
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000382071 ENST00000332018(uc001upj.3)
miRNA
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hsa-miR-4328
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Inhib. RNA
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                     Customized lentivirus expression plasmids for stable overexpression of C1QTNF9 
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1QTNF9

Additional mRNA sequence: 

AY358145.1 BC040438.1 

1 DOTS entry:

DT.95304754 

24/228 AceView cDNA sequences (see all 228):

R78453 CD678459 AA253426 BX283763 BX107153 AA250723 AA159751 NM_153023 
AK055770 AK123225 AK092759 BE735417 BE856262 AL040353 BM710110 BX644087 
BU742194 BE502293 AL699742 AA987987 AK123031 AI435823 AL707817 AW206404 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

C1QTNF9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CATTAGCTAT
C1QTNF9 Expression
About this image


See C1QTNF9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C1QTNF9

SOURCE GeneReport for Unigene cluster: Hs.362854

UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
Tissue specificity: Expressed predominantly in adipose tissue

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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1QTNF9
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF9 gene from 4/10 species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia C1qtnf91 , 5 C1q and tumor necrosis factor related protein 91, 5 82.03(n)1
84.94(a)1
  14 (31.93 cM)5
2391261  NM_183175.41  NP_898998.21 
 607681345 
chicken
(Gallus gallus)
Aves C1QTNF91 C1q and tumor necrosis factor related protein 9 67.37(n)
65.66(a)
  771538  XM_001234805.2  XP_001234806.2 
lizard
(Anolis carolinensis)
Reptilia --
--
--
61(a)
34(a)
1 ↔ many
possible ortholog
3(188868624-188872605)
5(20223233-20228717)
zebrafish
(Danio rerio)
Actinopterygii c1qtnf91 C1q and tumor necrosis factor related protein 9 59.93(n)
59.28(a)
  799425  NM_001114462.1  NP_001107934.1 


ENSEMBL Gene Tree for C1QTNF9 (if available)
TreeFam Gene Tree for C1QTNF9 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for C1QTNF9 gene
C1QTNF62  COL10A12  C1QB2  C1QTNF12  C1QTNF9B2  C1QA2  C1QTNF42  COL8A22  
C1QTNF52  COL8A12  OTOL12  C1QTNF82  C1QTNF72  C1QC2  C1QTNF22  ADIPOQ2  
18/33 SIMAP similar genes for C1QTNF9 using alignment to 1 protein entry:     C1T9A_HUMAN(see all similar genes):
C1QTNF9B    ADIPOQ    C1QTNF2    OTOL1    C1QTNF7    COL11A1
COL11A2    COL9A1    COL1A2    COL8A2    COL3A1    COL2A1
COL4A2    COL5A1    COL6A3    COL9A2    C1QC    C1QL1

C1QTNF9 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/438 SNPs in C1QTNF9 are shown (see all 438)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 13 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs740406731,2
C,F--24881767(+) GCTCCT/CCCCAA 1 -- us2k14Minor allele frequency- C:0.21WA NA 242
rs1887643381,2
--24881804(+) TCGCTA/GGGGTG 1 -- us2k10--------
rs1932820911,2
--24881819(+) GGGGGC/TGAGCC 1 -- us2k10--------
rs19743331,2
C,A,H--24881867(+) TAGGAG/CACAGT 1 -- us2k111Minor allele frequency- C:0.05NA WA CSA 255
rs1833686281,2
--24882341(+) AGGTGA/GTCCTG 1 -- us2k10--------
rs775538191,2
C,F--24882401(+) GCAGCG/CAGACG 1 -- us2k11Minor allele frequency- C:0.35EA 120
rs95510911,2
C,F--24882475(+) GGTCAG/CAGACC 1 -- us2k16Minor allele frequency- C:0.27NA CSA WA EA 364
rs788435031,2
F--24882507(+) CCCGGC/TCAGAA 1 -- us2k11Minor allele frequency- T:0.01NA 120
rs1874148871,2
--24882617(+) CACTCA/GTTTTA 1 -- us2k10--------
rs1921636081,2
--24882693(+) GGGAAA/GTTGAG 1 -- us2k10--------

HapMap Linkage Disequilibrium report for C1QTNF9 (24881304 - 24896673 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10/15 variations for C1QTNF9 (see all 15):    About this table     
Variant IDTypeSubtypePubMed ID
esv2747122CNV Deletion23290073
esv2422502CNV Duplication17116639
esv2422202CNV Duplication17116639
esv2751136CNV Loss17911159
nsv899940CNV Loss21882294
nsv832567CNV Loss17160897
nsv899936CNV Gain21882294
esv2751137CNV Gain17911159
nsv525965CNV Gain19592680
dgv1561n71CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

C1QTNF9 for disorders           About MalaCards
OMIM gene information: 614285    OMIM disorders: --


C1QTNF9 for disorders           About GeneDecksing


Export disorders for C1QTNF9 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for C1QTNF9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C1QTNF9)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
  2. Identification and characterization of CTRP9, a novel secreted glycoprotein, from adipose tissue that reduces serum glucose in mice and forms heterotrimers with adiponectin. (PubMed id 18787108)1, 3 Wong G.W....Lodish H.F. (2009)
  3. CTRP8 and CTRP9B are novel proteins that hetero-oligo merize with C1q/TNF family members. (PubMed id 19666007)2 Peterson J.M....Wong G.W. (2009)
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
  5. The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (2004)
  6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 338872 HGNC: 28732 AceView: SPATA13andMGC48915 Ensembl:ENSG00000240654 euGenes: HUgn338872
ECgene: C1QTNF9 H-InvDB: C1QTNF9

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for C1QTNF9 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for C1QTNF9 gene:
Search GeneIP for patents involving C1QTNF9

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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(GIFtS: 73)
transforming growth factor, beta 1
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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