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C1QTNF9 Gene

protein-coding   GIFtS: 46
GCID: GC13P024881

C1q And Tumor Necrosis Factor Related Protein 9

  Search for C1QTNF9
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
C1q And Tumor Necrosis Factor Related Protein 91 2     AQL12
C1QTNF9A2 3 5     Complement C1q And Tumor Necrosis Factor-Related Protein 9A2
Complement C1q And Tumor Necrosis Factor-Related Protein 92 3     Complement C1q Tumor Necrosis Factor-Related Protein 92
CTRP92 5     Complement C1q Tumor Necrosis Factor-Related Protein 9A2

External Ids:    HGNC: 287321   Entrez Gene: 3388722   Ensembl: ENSG000002406547   OMIM: 6142855   UniProtKB: P0C8623   

Export aliases for C1QTNF9 gene to outside databases

Previous GC identifers: GC13P023779 GC13P005695


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C1QTNF9 Gene:
C1QTNF9 (C1q and tumor necrosis factor related protein 9) is a protein-coding gene. GO annotations related to this gene include hormone activity. An important paralog of this gene is C1QTNF6.

UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000013.11  NC_018924.2  NT_024524.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the C1QTNF9 gene promoter:
         AhR   Lmo2   E2F-2   STAT5A   GATA-2   Arnt   PPAR-alpha   E2F-1   Ik-2   E2F   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC1QTNF9 promoter sequence
   Search Chromatin IP Primers for C1QTNF9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C1QTNF9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q12.12   Ensembl cytogenetic band:  13q12.12   HGNC cytogenetic band: 13q12.12

C1QTNF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QTNF9 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P024881:  view genomic region     (about GC identifiers)

Start:
24,881,304 bp from pter      End:
24,896,673 bp from pter
Size:
15,370 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862 (See protein sequence)
Recommended Name: Complement C1q and tumor necrosis factor-related protein 9A precursor  
Size: 333 amino acids; 34681 Da
Subunit: Multimers (predominantly trimers). Interacts with ADIPOQ via the C1q domain to form a heterotrimeric
complex (By similarity). Interacts with CTRP9B. Forms heterotrimers and heterooligomeric complexes with CTRP9B
Secondary accessions: A2A3T6 Q0VGC5 Q5VX65 Q5VX66 Q8IUU4

Explore the universe of human proteins at neXtProt for C1QTNF9: NX_P0C862

Explore proteomics data for C1QTNF9 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Lys73, Lys127

  • See C1QTNF9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_848635.2  
    ENSEMBL proteins: 
     ENSP00000371503   ENSP00000333737  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR008983 Tumour_necrosis_fac-like_dom
     IPR008160 Collagen
     IPR001073 C1q

    Graphical View of Domain Structure for InterPro Entry P0C862

    ProtoNet protein and cluster: P0C862

    UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
    Similarity: Contains 1 C1q domain
    Similarity: Contains 3 collagen-like domains


    C1QTNF9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: C1T9A_HUMAN, P0C862
    Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005179hormone activity IEA--
    GO:0005515protein binding ----
         
    C1QTNF9 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI phenotypic allele for C1qtnf9 (no phenotypes)

    C1QTNF9 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out C1qtnf9tm1Lex for C1QTNF9

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for C1QTNF9
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for C1QTNF9
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for C1QTNF9

    miRNA
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    miRTarBase miRNAs that target C1QTNF9:
    hsa-mir-181a-5p (MIRT025172)

    Block miRNA regulation of human, mouse, rat C1QTNF9 using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate C1QTNF9:
    hsa-miR-4328
    SwitchGear 3'UTR luciferase reporter plasmidC1QTNF9 3' UTR sequence
    Inhib. RNA
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    Sino Biological Human cDNA Clone for C1QTNF9
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    C1T9A_HUMAN, P0C862: Secreted (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular5
    cytosol1
    mitochondrion1
    nucleus1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005581collagen IEA--

    C1QTNF9 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C1QTNF9
    Interactions:

        Search GeneGlobe Interaction Network for C1QTNF9

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C1QTNF9 (C1T9A)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for C1QTNF9 gene: 
    NM_178540.3  

    Unigene Cluster for C1QTNF9:

    C1q and tumor necrosis factor related protein 9
    Hs.362854  [show with all ESTs]
    Unigene Representative Sequence: NM_178540
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000382071 ENST00000332018(uc001upj.3)
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate C1QTNF9:
    hsa-miR-4328
    SwitchGear 3'UTR luciferase reporter plasmidC1QTNF9 3' UTR sequence
    Inhib. RNA
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat C1QTNF9
      QuantiTect SYBR Green Assays in human, mouse, rat C1QTNF9
      QuantiFast Probe-based Assays in human, mouse, rat C1QTNF9

    Additional mRNA sequence: 

    AY358145.1 BC040438.1 

    1 DOTS entry:

    DT.95304754 

    Selected AceView cDNA sequences (see all 228):

    AK097217 BM710110 H03469 AW075731 AI435823 BX644087 NM_153023 BU742194 
    BE735417 BX646944 BE856262 AL040353 AL699742 AA732279 CB136185 R78453 
    BE502293 AA159751 BU429984 AI306427 BM853281 BX107153 BX283763 AK123225 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    C1QTNF9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CATTAGCTAT
    C1QTNF9 Expression
    About this image

    C1QTNF9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C1QTNF9 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.362854

    UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862
    Tissue specificity: Expressed predominantly in adipose tissue

        Custom PCR Arrays for C1QTNF9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for C1QTNF9 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia C1qtnf95 C1q and tumor necrosis factor related protein 9   --   14 (31.93 cM) 60768134 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    64(a)
    1 → many
    1(176649882-176655655)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    61(a)
    1 → many
    3(188868624-188872605)
    zebrafish
    (Danio rerio)
    Actinopterygii c1qtnf91 C1q and tumor necrosis factor related protein 9 58.82(n)
    56.88(a)
      799425  NM_001114462.1  NP_001107934.1 


    ENSEMBL Gene Tree for C1QTNF9 (if available)
    TreeFam Gene Tree for C1QTNF9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for C1QTNF9 gene
    C1QTNF62  C1QB2  COL10A12  C1QTNF12  C1QTNF9B2  C1QA2  C1QTNF42  COL8A22  
    C1QTNF52  COL8A12  OTOL12  C1QTNF82  C1QTNF72  C1QC2  C1QTNF22  ADIPOQ2  
    Selected SIMAP similar genes for C1QTNF9 using alignment to 1 protein entry:     C1T9A_HUMAN(see all similar genes):
    C1QTNF9B    ADIPOQ    C1QTNF2    OTOL1    C1QTNF7    COL11A1
    COL11A2    COL9A1    COL8A2    COL1A2    COL3A1    COL2A1
    COL4A2    COL5A1    COL6A3    COL9A2    C1QC    C1QL1

    C1QTNF9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for C1QTNF9 (see all 438)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 13 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs740406731,2
    C,F--24881767(+) GCTCCT/CCCCAA 1 -- us2k14Minor allele frequency- C:0.21WA NA 242
    rs1887643381,2
    --24881804(+) TCGCTA/GGGGTG 1 -- us2k10--------
    rs1932820911,2
    --24881819(+) GGGGGC/TGAGCC 1 -- us2k10--------
    rs19743331,2
    C,A,H--24881867(+) TAGGAG/CACAGT 1 -- us2k111Minor allele frequency- C:0.05NA WA CSA 255
    rs1833686281,2
    --24882341(+) AGGTGA/GTCCTG 1 -- us2k10--------
    rs775538191,2
    C,F--24882401(+) GCAGCG/CAGACG 1 -- us2k11Minor allele frequency- C:0.35EA 120
    rs95510911,2
    C,F--24882475(+) GGTCAG/CAGACC 1 -- us2k16Minor allele frequency- C:0.27NA CSA WA EA 364
    rs788435031,2
    F--24882507(+) CCCGGC/TCAGAA 1 -- us2k11Minor allele frequency- T:0.01NA 120
    rs1874148871,2
    --24882617(+) CACTCA/GTTTTA 1 -- us2k10--------
    rs1921636081,2
    --24882693(+) GGGAAA/GTTGAG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for C1QTNF9 (24881304 - 24896673 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for C1QTNF9 (see all 15):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2747122CNV Deletion23290073
    esv2422502CNV Duplication17116639
    esv2422202CNV Duplication17116639
    esv2751136CNV Loss17911159
    nsv899940CNV Loss21882294
    nsv832567CNV Loss17160897
    nsv899936CNV Gain21882294
    esv2751137CNV Gain17911159
    nsv525965CNV Gain19592680
    dgv1561n71CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing C1QTNF9
    DNA2.0 Custom Variant and Variant Library Synthesis for C1QTNF9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 614285    OMIM disorders: --


    C1QTNF9 for disorders           About GeneDecksing


    Export disorders for C1QTNF9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C1QTNF9 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with C1QTNF9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (Genome Res. 2003)
    2. Identification and characterization of CTRP9, a novel secreted glycoprotein, from adipose tissue that reduces serum glucose in mice and forms heterotrimers with adiponectin. (PubMed id 18787108)1, 3 Wong G.W....Lodish H.F. (FASEB J. 2009)
    3. CTRP8 and CTRP9B are novel proteins that hetero-oligomerize with C1q/TNF family members. (PubMed id 19666007)2 Peterson J.M.... Wong G.W. (Biochem. Biophys. Res. Commun. 2009)
    4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    5. The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (Nature 2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 338872 HGNC: 28732 AceView: SPATA13andMGC48915 Ensembl:ENSG00000240654 euGenes: HUgn338872
    ECgene: C1QTNF9 H-InvDB: C1QTNF9

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C1QTNF9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for C1QTNF9 gene:
    Search GeneIP for patents involving C1QTNF9

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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