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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

C1QTNF4 Gene

protein-coding GIFtS: 45
GCID: GC11M047611

C1q and tumor necrosis factor related protein 4

Search for C1QTNF4
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
C1q And Tumor Necrosis Factor Related Protein 4¹ ²
CTRP4¹ ² ³
ZACRP4¹ ²
Complement C1q Tumor Necrosis Factor-Related Protein 4²
Complement-C1q Tumor Necrosis Factor-Related Protein 4²

External Ids:	HGNC: 14346¹	Entrez Gene: 114900²	Ensembl: ENSG00000172247⁷	OMIM: 614911⁵	UniProtKB: Q9BXJ3³

Export aliases for C1QTNF4 gene to outside databases

Previous GC identifers: GC11M049522 GC11M048488 GC11M047643 GC11M047575 GC11M047567 GC11M047312

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: C1QT4_HUMAN, Q9BXJ3

Function: May act as a pro-inflammatory cytokine, that induces the activation of NF-kappa-B signaling pathway and

up-regulates IL6 production

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_009237.18

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the C1QTNF4 gene promoter:
YY1 CREB RORalpha1 deltaCREB Zic1 ZID AP-2alpha Pax-4a AP-2alphaA En-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: C1QTNF4 promoter sequence

Search SABiosciences Chromatin IP Primers for C1QTNF4

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QTNF4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q11 Ensembl cytogenetic band: 11p11.2 HGNC cytogenetic band: 11q11

C1QTNF4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QTNF4 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11M047611: view genomic region (about GC identifiers)

Start:	47,611,216 bp from pter	End:	47,616,211 bp from pter
Size:	4,996 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: C1QT4_HUMAN, Q9BXJ3 (See protein sequence)

Recommended Name: Complement C1q tumor necrosis factor-related protein 4 precursor

Size: 329 amino acids; 35256 Da

Subcellular location: Secreted

Secondary accessions: Q8IV25

Explore the universe of human proteins at neXtProt for C1QTNF4: NX_Q9BXJ3

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q9BXJ3

C1QTNF4 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_114115.2

ENSEMBL proteins:

ENSP00000302274 ENSP00000434548

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	--	--
GO:0005615	extracellular space	IEA	--

C1QTNF4 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

C1QTNF4 for domains About GeneDecksing

2 InterPro domains/families:

IPR008983 Tumour_necrosis_fac-like_dom

IPR001073 C1q

Graphical View of Domain Structure for InterPro Entry Q9BXJ3

ProtoNet protein and cluster: Q9BXJ3

1 Blocks protein family: IPB001073 Complement C1q protein

UniProtKB/Swiss-Prot: C1QT4_HUMAN, Q9BXJ3

Similarity: Contains 2 C1q domains

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: C1QT4_HUMAN, Q9BXJ3

Function: May act as a pro-inflammatory cytokine, that induces the activation of NF-kappa-B signaling pathway and

up-regulates IL6 production

Induction: Up-regulated by IL6

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005125	cytokine activity	IEA	--

C1QTNF4 for ontologies About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for C1QTNF4

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for C1QTNF4 gene:

NM_031909.2

Unigene Cluster for C1QTNF4:

C1q and tumor necrosis factor related protein 4

Hs.662633 [show with all ESTs]

Unigene Representative Sequence: BQ068291

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000302514(uc001ngc.2) ENST00000530097

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Additional cDNA sequence:

AF329838.1 BC035628.1

2 DOTS entries:

DT.97840210 DT.92047789

24/32 AceView cDNA sequences (see all 32):

CR614754 BC035628 BM716779 AW163266 BF115527 BE857943 AF329838 BI756346

BM967211 NM_031909 CK823465 BG716758 CD107260 BX324410 AI652297 BX459970

BI757600 BM543573 AI209086 AI878893 AW204677 BF967925 BM926070 BF967202

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

C1QTNF4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCAGGCCGGG

About this image

C1QTNF4 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Definitive endoderm-like cells (A scalable, suspensi...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See C1QTNF4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C1QTNF4

SOURCE GeneReport for Unigene cluster: Hs.662633

UniProtKB/Swiss-Prot: C1QT4_HUMAN, Q9BXJ3

Tissue specificity: Widely expressed at low levels

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF4 gene from 4/11 species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	C1QTNF4¹	C1q and tumor necrosis factor related protein 4	63.93(n) 63.09(a)		428863 XM_426420.3 XP_426420.3
lizard (Anolis carolinensis)	Reptilia	C1QTNF4⁶	--	60(a)	1 ↔ 1	1(44312831-44314233)
African clawed frog (Xenopus laevis)	Amphibia	Xl.26293²	Xenopus laevis transcribed sequence with weak similarity more	74.52(n)		CD325653.1
zebrafish (Danio rerio)	Actinopterygii	wufi33h02²	Transcribed sequence with weak similarity to protein more	77.72(n)		BI845426.1

ENSEMBL Gene Tree for C1QTNF4 (if available)
TreeFam Gene Tree for C1QTNF4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for C1QTNF4 gene

C1QTNF6² C1QTNF8² C1QTNF1²

C1QTNF4 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for C1QTNF4
PGOHUM00000257808

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs145300279^1,2		--	47610796(+)	`CCTGCG/TCTGGG`	2	--	int¹		0	--	--	--	--
rs180799689^1,2		--	47611141(+)	`CCCCGC/GGCCTG`	2	--	int¹		0	--	--	--	--
rs185420118^1,2		--	47611148(+)	`CCTGCA/GGGCCC`	2	--	int¹		0	--	--	--	--
rs11039307^1,2	C,F,A,H,	--	47611152(+)	`CGGGCC/TCGCAG`	2	--	int¹		9		NA WA EA	370
rs111702042^1,2		--	47611159(+)	`GCAGTG/AGTCAG`	2	--	int¹		1		CSA	1
rs181310562^1,2		--	47611216(+)	`CAGGGA/GCCTGG`	2	--	ut3¹ int¹		0	--	--	--	--
rs186546762^1,2	C,	--	47611477(+)	`GTAGGC/TGCCGT`	2	T A	mis¹		0	--	--	--	--
rs200189635^1,2		--	47611502(+)	`TGGCTA/GAGCAG`	2	L	syn¹		0	--	--	--	--
rs202156683^1,2		--	47611523(+)	`TCGCCG/TCGCCG`	2	R	syn¹		0	--	--	--	--
rs145222942^1,2	C,	--	47611580(+)	`GCGCCG/ATCGTC`	2	/D	syn¹		1		NA	3672

HapMap Linkage Disequilibrium report for C1QTNF4 (47611216 - 47616211 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for C1QTNF4
1 CNV: 4741

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

C1QTNF4 for disorders About MalaCards

C1QTNF4 for disorders About GeneDecksing

OMIM gene information: 614911 OMIM disorders: --

Export disorders for C1QTNF4 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for C1QTNF4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C1QTNF4)

Utopia: connect your pdf to the dynamic
world of online information

Identification of C1qTNF-related protein 4 as a poten tial cytokine that stimulates the STAT3 and NF-I_B pathways and promotes cell su rvival in human cancer cells. (PubMed id 21658842)^{1, 2} Li Q....Wang L. (2011)
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. (PubMed id 16094384)^{1, 3} Tao W.A.... Aebersold R. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 114900	HGNC: 14346	AceView: C1QTNF4	Ensembl:ENSG00000172247	euGenes: HUgn114900
ECgene: C1QTNF4	H-InvDB: C1QTNF4

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for C1QTNF4	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for C1QTNF4	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for C1QTNF4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for C1QTNF4 gene:
Search GeneIP for patents involving C1QTNF4

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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C1QTNF4 Gene

C1q and tumor necrosis factor related protein 4

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C1QTNF4 Gene

C1q and tumor necrosis factor related protein 4

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