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Aliases for C1QTNF4 Gene

Aliases for C1QTNF4 Gene

  • C1q And Tumor Necrosis Factor Related Protein 4 2 3
  • CTRP4 3 4 6
  • Complement-C1q Tumor Necrosis Factor-Related Protein 4 2 3
  • Complement C1q Tumor Necrosis Factor-Related Protein 4 3
  • ZACRP4 3

External Ids for C1QTNF4 Gene

Previous GeneCards Identifiers for C1QTNF4 Gene

  • GC11M049522
  • GC11M048488
  • GC11M047643
  • GC11M047575
  • GC11M047567
  • GC11M047611
  • GC11M047312

Summaries for C1QTNF4 Gene

GeneCards Summary for C1QTNF4 Gene

C1QTNF4 (C1q And Tumor Necrosis Factor Related Protein 4) is a Protein Coding gene. GO annotations related to this gene include cytokine activity. An important paralog of this gene is COL8A1.

UniProtKB/Swiss-Prot for C1QTNF4 Gene

  • May act as a pro-inflammatory cytokine, that induces the activation of NF-kappa-B signaling pathway and up-regulates IL6 production.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF4 Gene

Genomics for C1QTNF4 Gene

Regulatory Elements for C1QTNF4 Gene

Genomic Location for C1QTNF4 Gene

Start:
47,589,664 bp from pter
End:
47,594,659 bp from pter
Size:
4,996 bases
Orientation:
Minus strand

Genomic View for C1QTNF4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C1QTNF4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF4 Gene

Proteins for C1QTNF4 Gene

  • Protein details for C1QTNF4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXJ3-C1QT4_HUMAN
    Recommended name:
    Complement C1q tumor necrosis factor-related protein 4
    Protein Accession:
    Q9BXJ3
    Secondary Accessions:
    • Q8IV25

    Protein attributes for C1QTNF4 Gene

    Size:
    329 amino acids
    Molecular mass:
    35256 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1QTNF4 Gene

Proteomics data for C1QTNF4 Gene at MOPED

Post-translational modifications for C1QTNF4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1QTNF4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1QTNF4 Gene

Domains for C1QTNF4 Gene

Protein Domains for C1QTNF4 Gene

Suggested Antigen Peptide Sequences for C1QTNF4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BXJ3

UniProtKB/Swiss-Prot:

C1QT4_HUMAN :
  • Q9BXJ3
Domain:
  • Contains 2 C1q domains.
genes like me logo Genes that share domains with C1QTNF4: view

No data available for Gene Families for C1QTNF4 Gene

Function for C1QTNF4 Gene

Molecular function for C1QTNF4 Gene

UniProtKB/Swiss-Prot Function: May act as a pro-inflammatory cytokine, that induces the activation of NF-kappa-B signaling pathway and up-regulates IL6 production.
UniProtKB/Swiss-Prot Induction: Up-regulated by IL6.

Gene Ontology (GO) - Molecular Function for C1QTNF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with C1QTNF4: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1QTNF4

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C1QTNF4 Gene

Localization for C1QTNF4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF4 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C1QTNF4 Gene COMPARTMENTS Subcellular localization image for C1QTNF4 gene
Compartment Confidence
extracellular 5
cytosol 1
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C1QTNF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with C1QTNF4: view

Pathways for C1QTNF4 Gene

SuperPathways for C1QTNF4 Gene

No Data Available

Interacting Proteins for C1QTNF4 Gene

Gene Ontology (GO) - Biological Process for C1QTNF4 Gene

None

No data available for Pathways by source for C1QTNF4 Gene

Transcripts for C1QTNF4 Gene

mRNA/cDNA for C1QTNF4 Gene

(32) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1QTNF4 Gene

C1q and tumor necrosis factor related protein 4:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C1QTNF4

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF4 Gene

No ASD Table

Relevant External Links for C1QTNF4 Gene

GeneLoc Exon Structure for
C1QTNF4
ECgene alternative splicing isoforms for
C1QTNF4

Expression for C1QTNF4 Gene

mRNA expression in normal human tissues for C1QTNF4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1QTNF4 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (7.4), Brain - Putamen (basal ganglia) (6.7), and Brain - Caudate (basal ganglia) (5.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C1QTNF4 Gene

SOURCE GeneReport for Unigene cluster for C1QTNF4 Gene Hs.662633

mRNA Expression by UniProt/SwissProt for C1QTNF4 Gene

Q9BXJ3-C1QT4_HUMAN
Tissue specificity: Widely expressed at low levels.
genes like me logo Genes that share expressions with C1QTNF4: view

In Situ Assay Products

Orthologs for C1QTNF4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF4 35
  • 99.19 (n)
  • 99.09 (a)
C1QTNF4 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MGC137014 36
  • 24 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia C1QTNF4 35
  • 92.99 (n)
  • 94.59 (a)
C1QTNF4 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia C1qtnf4 35
  • 90.52 (n)
  • 94.89 (a)
C1qtnf4 16
C1qtnf4 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 23 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia C1QTNF4 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia C1qtnf4 35
  • 87.65 (n)
  • 91.05 (a)
chicken
(Gallus gallus)
Aves C1QTNF4 35
  • 64.56 (n)
  • 64.33 (a)
C1QTNF4 36
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C1QTNF4 36
  • 63 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.26293 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c1qtnf4 35
  • 64.02 (n)
  • 62.76 (a)
zebrafish
(Danio rerio)
Actinopterygii c1qtnf4 35
  • 66.15 (n)
  • 65 (a)
c1qtnf4 36
  • 49 (a)
OneToOne
wufi33h02 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
OneToMany
Species with no ortholog for C1QTNF4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1QTNF4 Gene

ENSEMBL:
Gene Tree for C1QTNF4 (if available)
TreeFam:
Gene Tree for C1QTNF4 (if available)

Paralogs for C1QTNF4 Gene

Pseudogenes.org Pseudogenes for C1QTNF4 Gene

genes like me logo Genes that share paralogs with C1QTNF4: view

Variants for C1QTNF4 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF4 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1568164 -- 47,592,972(+) TGTCC(C/T)TTGGT intron-variant
rs3946664 -- 47,592,997(+) GGGAA(G/T)GGGCC intron-variant
rs4418760 -- 47,593,697(+) TGGGG(C/T)TCAAA intron-variant
rs4498952 -- 47,591,224(+) caggt(A/G)cgcac intron-variant
rs5791771 -- 47,592,916(+) TTCCA(-/G)AGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF4 Gene

Variant ID Type Subtype PubMed ID
nsv832142 CNV Loss 17160897
nsv825872 CNV Gain 20364138
nsv509405 CNV Insertion 20534489
nsv825873 CNV Gain 20364138

Relevant External Links for C1QTNF4 Gene

HapMap Linkage Disequilibrium report
C1QTNF4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF4 Gene

Disorders for C1QTNF4 Gene

No disorders were found for C1QTNF4 Gene.

No data available for UniProtKB/Swiss-Prot for C1QTNF4 Gene

Publications for C1QTNF4 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. (PMID: 16094384) Tao W.A. … Aebersold R. (Nat. Methods 2005) 2 3
  3. Identification of C1qTNF-related protein 4 as a potential cytokine that stimulates the STAT3 and NF-kappaB pathways and promotes cell survival in human cancer cells. (PMID: 21658842) Li Q. … Wang L. (Cancer Lett. 2011) 3 4
  4. C1q/TNF-related protein 4 (CTRP4) is a unique secreted protein with two tandem C1q domains that functions in the hypothalamus to modulate food intake and body weight. (PMID: 24366864) Byerly M.S. … Wong G.W. (J. Biol. Chem. 2014) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C1QTNF4 Gene

Sources for C1QTNF4 Gene

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