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Aliases for C1QTNF3-AMACR Gene

Subcategory (RNA class) for C1QTNF3-AMACR Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for C1QTNF3-AMACR Gene

  • C1QTNF3-AMACR Readthrough (NMD Candidate) 2 3 5

External Ids for C1QTNF3-AMACR Gene

Previous GeneCards Identifiers for C1QTNF3-AMACR Gene

  • GC05U901547
  • GC05M033988

Summaries for C1QTNF3-AMACR Gene

Entrez Gene Summary for C1QTNF3-AMACR Gene

  • This locus represents naturally occurring read-through transcription between the neighboring C1q and tumor necrosis factor related protein 3 (C1QTNF3) and alpha-methylacyl-CoA racemase (AMACR) genes on chromosome 5. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus not likely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for C1QTNF3-AMACR Gene

C1QTNF3-AMACR (C1QTNF3-AMACR Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is C1QTNF3.

Additional gene information for C1QTNF3-AMACR Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF3-AMACR Gene

Genomics for C1QTNF3-AMACR Gene

Regulatory Elements for C1QTNF3-AMACR Gene

Enhancers for C1QTNF3-AMACR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H034124 0.2 ENCODE 0.7 +0.1 88 0 C1QTNF3-AMACR ENSG00000279995
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1QTNF3-AMACR on UCSC Golden Path with GeneCards custom track

Genomic Location for C1QTNF3-AMACR Gene

Chromosome:
5
Start:
33,986,986 bp from pter
End:
34,124,528 bp from pter
Size:
137,543 bases
Orientation:
Minus strand

Genomic View for C1QTNF3-AMACR Gene

Genes around C1QTNF3-AMACR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF3-AMACR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF3-AMACR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF3-AMACR Gene

Proteins for C1QTNF3-AMACR Gene

  • Protein details for C1QTNF3-AMACR Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E9PGA6
    Recommended name:
    C1QTNF3-AMACR readthrough (NMD candidate)
    Protein Accession:
    E9PGA6

    Protein attributes for C1QTNF3-AMACR Gene

    Size:
    284 amino acids
    Molecular mass:
    31075 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1QTNF3-AMACR Gene

Protein Expression for C1QTNF3-AMACR Gene

Post-translational modifications for C1QTNF3-AMACR Gene

No Post-translational modifications

Other Protein References for C1QTNF3-AMACR Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for C1QTNF3-AMACR Gene

Domains & Families for C1QTNF3-AMACR Gene

Protein Domains for C1QTNF3-AMACR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QTNF3-AMACR: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1QTNF3-AMACR Gene

Function for C1QTNF3-AMACR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF3-AMACR Gene

Localization for C1QTNF3-AMACR Gene

Gene Ontology (GO) - Cellular Components for C1QTNF3-AMACR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005581 collagen trimer IEA --
genes like me logo Genes that share ontologies with C1QTNF3-AMACR: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for C1QTNF3-AMACR Gene

Pathways & Interactions for C1QTNF3-AMACR Gene

SuperPathways for C1QTNF3-AMACR Gene

No Data Available

Interacting Proteins for C1QTNF3-AMACR Gene

Gene Ontology (GO) - Biological Process for C1QTNF3-AMACR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF3-AMACR Gene

Drugs & Compounds for C1QTNF3-AMACR Gene

No Compound Related Data Available

Transcripts for C1QTNF3-AMACR Gene

mRNA/cDNA for C1QTNF3-AMACR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF3-AMACR Gene

No ASD Table

Relevant External Links for C1QTNF3-AMACR Gene

GeneLoc Exon Structure for
C1QTNF3-AMACR
ECgene alternative splicing isoforms for
C1QTNF3-AMACR

Expression for C1QTNF3-AMACR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1QTNF3-AMACR Gene

Protein differential expression in normal tissues from HIPED for C1QTNF3-AMACR Gene

This gene is overexpressed in Fetal gut (23.3), Bone marrow mesenchymal stem cell (14.7), Breast (11.4), and Vitreous humor (10.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for C1QTNF3-AMACR Gene



Protein tissue co-expression partners for C1QTNF3-AMACR Gene

genes like me logo Genes that share expression patterns with C1QTNF3-AMACR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QTNF3-AMACR Gene

Orthologs for C1QTNF3-AMACR Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF3-AMACR Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia C1QTNF3 34
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 85 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 79 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 69 (a)
OneToMany
mouse
(Mus musculus)
Mammalia C1qtnf3 34
  • 68 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 34
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii cbln12 34
  • 25 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 30 (a)
OneToMany
Species where no ortholog for C1QTNF3-AMACR was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1QTNF3-AMACR Gene

ENSEMBL:
Gene Tree for C1QTNF3-AMACR (if available)
TreeFam:
Gene Tree for C1QTNF3-AMACR (if available)

Paralogs for C1QTNF3-AMACR Gene

Paralogs for C1QTNF3-AMACR Gene

genes like me logo Genes that share paralogs with C1QTNF3-AMACR: view

Variants for C1QTNF3-AMACR Gene

Sequence variations from dbSNP and Humsavar for C1QTNF3-AMACR Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs121917814 Pathogenic 34,007,866(-) AGCGC(C/T)CGCTA intron-variant, reference, missense
rs121917816 Pathogenic 34,005,827(-) CAGGC(C/T)GAGTG nc-transcript-variant, reference, missense
rs10941112 Likely benign 34,004,602(-) CACTG(A/G)CAAGG intron-variant, reference, missense
rs113746028 Likely benign 33,987,132(+) CCTGC(C/T)CCACC nc-transcript-variant, utr-variant-3-prime
rs116206502 Likely benign 33,987,289(+) CATAA(A/C)CTTAT nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF3-AMACR Gene

Variant ID Type Subtype PubMed ID
dgv5626n100 CNV loss 25217958
esv1163132 CNV insertion 17803354
esv26035 CNV loss 19812545
esv2759340 CNV gain+loss 17122850
esv32686 CNV loss 17666407
esv33890 CNV gain+loss 17666407
esv3604666 CNV gain 21293372
esv3604667 CNV loss 21293372
esv3604668 CNV loss 21293372
esv3604669 CNV loss 21293372
nsv1019937 CNV loss 25217958
nsv428116 CNV gain+loss 18775914
nsv469604 CNV gain 16826518
nsv507243 OTHER sequence alteration 20534489
nsv519240 CNV gain 19592680
nsv522715 CNV gain 19592680
nsv830255 CNV loss 17160897
nsv830256 CNV gain 17160897
nsv964836 CNV duplication 23825009
nsv964837 CNV duplication 23825009
nsv964838 CNV duplication 23825009
nsv968161 CNV duplication 23825009
nsv980631 CNV duplication 23825009

Relevant External Links for C1QTNF3-AMACR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF3-AMACR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C1QTNF3-AMACR Gene

Disorders for C1QTNF3-AMACR Gene

Relevant External Links for C1QTNF3-AMACR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1QTNF3-AMACR

No disorders were found for C1QTNF3-AMACR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF3-AMACR Gene

Publications for C1QTNF3-AMACR Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 60

Products for C1QTNF3-AMACR Gene

Sources for C1QTNF3-AMACR Gene

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