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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

C1QTNF2 Gene

protein-coding GIFtS: 46
GCID: GC05M159707

C1q and tumor necrosis factor related protein 2

Search for C1QTNF2
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
C1q And Tumor Necrosis Factor Related Protein 2¹ ²
CTRP2¹ ² ³
Complement C1q Tumor Necrosis Factor-Related Protein 2²
Complement-C1q Tumor Necrosis Factor-Related Protein 2²
Zacrp2¹

External Ids:	HGNC: 14325¹	Entrez Gene: 114898²	Ensembl: ENSG00000145861⁷	UniProtKB: Q9BXJ5³

Export aliases for C1QTNF2 gene to outside databases

Previous GC identifers: GC05M159893 GC05M160284 GC05M159710 GC05M159755 GC05M154868

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000005.9 NC_018916.1 NT_023133.13

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the C1QTNF2 gene promoter:
Tal-1beta POU3F2 AP-2gamma E47 E2F-1 E2F Hand1 ITF-2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: C1QTNF2 promoter sequence

Search SABiosciences Chromatin IP Primers for C1QTNF2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QTNF2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q33.3 Ensembl cytogenetic band: 5q33.3 HGNC cytogenetic band: 5q33.3

C1QTNF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QTNF2 gene location

GeneLoc information about chromosome 5 GeneLoc Exon Structure

GeneLoc location for GC05M159707: view genomic region (about GC identifiers)

Start:	159,774,758 bp from pter	End:	159,797,648 bp from pter
Size:	22,891 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: C1QT2_HUMAN, Q9BXJ5 (See protein sequence)

Recommended Name: Complement C1q tumor necrosis factor-related protein 2 precursor

Size: 285 amino acids; 29952 Da

Subcellular location: Secreted (Potential)

Sequence caution: Sequence=AAH11699.2; Type=Erroneous initiation; Sequence=AAH54506.2; Type=Erroneous initiation;

Explore the universe of human proteins at neXtProt for C1QTNF2: NX_Q9BXJ5

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q9BXJ5

C1QTNF2 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_114114.2

ENSEMBL proteins:

ENSP00000377545

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005581	collagen	IEA	--
GO:0005615	extracellular space	IEA	--

C1QTNF2 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

C1QTNF2 for domains About GeneDecksing

3 InterPro domains/families:

IPR008983 Tumour_necrosis_fac-like_dom

IPR008160 Collagen

IPR001073 C1q

Graphical View of Domain Structure for InterPro Entry Q9BXJ5

ProtoNet protein and cluster: Q9BXJ5

2 Blocks protein families:

IPB001073 Complement C1q protein

IPB008160 Collagen triple helix repeat

UniProtKB/Swiss-Prot: C1QT2_HUMAN, Q9BXJ5

Similarity: Contains 1 C1q domain

Similarity: Contains 1 collagen-like domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005102	receptor binding	IEA	--
GO:0042802	identical protein binding	IEA	--

C1QTNF2 for ontologies About GeneDecksing

Phenotypes:
1 MGI phenotypic allele

for C1qtnf2 (no phenotypes)

C1QTNF2 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-out C1qtnf2^tm1Lex for C1QTNF2

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for C1QTNF2

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In Situ Assay
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for C1QTNF2

Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000187	activation of MAPK activity	IEA	--
GO:0045725	positive regulation of glycogen biosynthetic process	IEA	--
GO:0046321	positive regulation of fatty acid oxidation	IEA	--
GO:0046326	positive regulation of glucose import	IEA	--
GO:0051260	protein homooligomerization	IEA	--

C1QTNF2 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for C1QTNF2 gene:

NM_031908.4

Unigene Cluster for C1QTNF2:

C1q and tumor necrosis factor related protein 2

Hs.110062 [show with all ESTs]

Unigene Representative Sequence: NM_031908

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000393975(uc003lyd.3)

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		SwitchGear 3'UTR luciferase reporter plasmid: C1QTNF2 3' UTR sequence

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Additional cDNA sequence:

AF329836.1 AY358839.1 BC011699.2 BC054506.1

2 DOTS entries:

DT.101980417 DT.95263550

24/26 AceView cDNA sequences (see all 26):

BF511014 BC054506 AA443206 BQ881020 BC011699 AY358839 BM675363 BQ006349

BM714600 NM_031908 AI288625 AF329836 AI916779 W79527 AW304481 BI489428

BI488418 AA346195 AI038644 AA443244 BI822472 AA194106 AA732948 AW965223

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

C1QTNF2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCACGGCGGT

About this image

C1QTNF2 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

2 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Bone

Endochondral Facial Bones

Bone

Thoracic Rib

Bone

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See C1QTNF2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C1QTNF2

SOURCE GeneReport for Unigene cluster: Hs.110062

SABiosciences Custom PCR Arrays for C1QTNF2

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF2 gene from 4/11 species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	C1qtnf2^{1 , 5}	C1q and tumor necrosis factor related protein 2^{1, 5}	88(n)¹ 94.12(a)¹		11 (25.72 cM)⁵ 69183¹ NM_026979.5¹ NP_081255.1¹ 43474276⁵
chicken (Gallus gallus)	Aves	C1QTNF2¹	C1q and tumor necrosis factor related protein 2	72.65(n) 80.28(a)		416156 XM_414488.2 XP_414488.1
lizard (Anolis carolinensis)	Reptilia	C1QTNF2⁶	--	75(a)	1 ↔ 1	GL343286.1(1188429-1190063)
zebrafish (Danio rerio)	Actinopterygii	c1qtnf2¹	C1q and tumor necrosis factor related protein 2	63.47(n) 70.11(a)		572041 XM_695699.4 XP_700791.1

ENSEMBL Gene Tree for C1QTNF2 (if available)
TreeFam Gene Tree for C1QTNF2 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for C1QTNF2 gene

C1QL3² COL8A2² C1QL2² C1QTNF9² C1QTNF5² OTOL1² C1QB² COL10A1²

C1QTNF3² C1QTNF9B² C1QA² COL8A1² C1QL1² C1QTNF7² C1QC² C1QL4²

ADIPOQ²

9 SIMAP similar genes for C1QTNF2 using alignment to 2 protein entries: C1QT2_HUMAN (see all proteins):

C1QTNF7 C1QTNF9 C1QTNF9B OTOL1 C1QA C1QB

ADIPOQ C1QC C1QL3

C1QTNF2 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 5 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs5023667^1,2		--	154875356(+)	`atataG/Tatata`	1	--	int¹		0	--	--	--	--
rs142932458^1,2		--	159774309(+)	`CAAAGC/GGTTAA`	1	--	ds500¹		0	--	--	--	--
rs190314149^1,2		--	159774365(+)	`AGAAGC/GGAAAG`	1	--	ds500¹		0	--	--	--	--
rs112315204^1,2		--	159774619(+)	`GGAACC/TATCCC`	1	--	ds500¹		1		CSA	2
rs114240786^1,2	C,F	--	159774624(+)	`TATCCC/TGTGCA`	1	--	ds500¹		1		WA	118
rs192253822^1,2		--	159774728(+)	`GTTTCA/GTGGGT`	1	--	ds500¹		0	--	--	--	--
rs141189520^1,2		--	159774879(+)	`CTCCCG/TCCTCA`	1	--	ut3¹		0	--	--	--	--
rs10056839^1,2	C,H	--	159774912(+)	`CAGGCG/ACCCAA`	1	--	ut3¹ ese³		8		WA NA CSA	14
rs117673004^1,2	F	--	159774920(+)	`CAACAC/ACACGC`	1	--	ut3¹		1		EA	120
rs138997544^1,2		--	159774949(+)	`TTTTTA/GGACGA`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for C1QTNF2 (159774758 - 159797648 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for C1QTNF2: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for C1QTNF2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C1QTNF2)

Utopia: connect your pdf to the dynamic
world of online information

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2} Clark H.F.... Gray A.M. (2003)
The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)² Schmutz J.... Rubin E.M. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 114898	HGNC: 14325	AceView: C1QTNF2	Ensembl:ENSG00000145861	euGenes: HUgn114898
ECgene: C1QTNF2	H-InvDB: C1QTNF2

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for C1QTNF2	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for C1QTNF2	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for C1QTNF2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for C1QTNF2 gene:
Search GeneIP for patents involving C1QTNF2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section


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	OriGene Custom Antibody Services for C1QTNF2		OriGene Custom Protein Services for C1QTNF2
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	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C1QTNF2
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	GenScript Custom Purified and Recombinant Proteins Services for C1QTNF2		GenScript cDNA clones with any tag delivered in your preferred vector for C1QTNF2
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	Regulatory tfbs in C1QTNF2 promoter
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	Proteins for C1QTNF2
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	Novus Tissue Slides
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	Antibodies for C1QTNF2
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Recombinant Protein for C1QTNF2

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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF2

	SwitchGear 3'UTR luciferase reporter plasmids for C1QTNF2
	SwitchGear Promoter luciferase reporter plasmids for C1QTNF2

ThermoFisher Antibodies for C1QTNF2

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C1QTNF2

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for C1QTNF2

Sirion Biotech Customized:

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GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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C1QTNF2 Gene

C1q and tumor necrosis factor related protein 2

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C1QTNF2 Gene

C1q and tumor necrosis factor related protein 2

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