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C1QTNF2 Gene

protein-coding   GIFtS: 45
GCID: GC05M159707

C1q And Tumor Necrosis Factor Related Protein 2

  Search for C1QTNF2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
C1q And Tumor Necrosis Factor Related Protein 21 2
CTRP22 3
Complement C1q Tumor Necrosis Factor-Related Protein 22
Complement-C1q Tumor Necrosis Factor-Related Protein 22
zacrp22

External Ids:    HGNC: 143251   Entrez Gene: 1148982   Ensembl: ENSG000001458617   UniProtKB: Q9BXJ53   

Export aliases for C1QTNF2 gene to outside databases

Previous GC identifers: GC05M159893 GC05M160284 GC05M159710 GC05M159755 GC05M154868


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C1QTNF2 Gene:
C1QTNF2 (C1q and tumor necrosis factor related protein 2) is a protein-coding gene. GO annotations related to this gene include identical protein binding and receptor binding. An important paralog of this gene is C1QTNF6.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000005.10  NT_023133.14  NC_018916.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C1QTNF2 gene promoter:
         Tal-1beta   POU3F2   AP-2gamma   E47   E2F-1   E2F   Hand1   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC1QTNF2 promoter sequence
   Search Chromatin IP Primers for C1QTNF2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C1QTNF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q33.3   Ensembl cytogenetic band:  5q33.3   HGNC cytogenetic band: 5q33.3

C1QTNF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QTNF2 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M159707:  view genomic region     (about GC identifiers)

Start:
159,774,758 bp from pter      End:
159,797,648 bp from pter
Size:
22,891 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: C1QT2_HUMAN, Q9BXJ5 (See protein sequence)
Recommended Name: Complement C1q tumor necrosis factor-related protein 2 precursor  
Size: 285 amino acids; 29952 Da
Subunit: May interact with FAM132B (By similarity)
Sequence caution: Sequence=AAH11699.2; Type=Erroneous initiation; Sequence=AAH54506.2; Type=Erroneous initiation;

Explore the universe of human proteins at neXtProt for C1QTNF2: NX_Q9BXJ5

Explore proteomics data for C1QTNF2 at MOPED


See C1QTNF2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_114114.2  
ENSEMBL proteins: 
 ENSP00000377545  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR008983 Tumour_necrosis_fac-like_dom
 IPR008160 Collagen
 IPR001073 C1q

Graphical View of Domain Structure for InterPro Entry Q9BXJ5

ProtoNet protein and cluster: Q9BXJ5

2 Blocks protein domains:
IPB001073 Complement C1q protein
IPB008160 Collagen triple helix repeat


UniProtKB/Swiss-Prot: C1QT2_HUMAN, Q9BXJ5
Similarity: Contains 1 C1q domain
Similarity: Contains 1 collagen-like domain


C1QTNF2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005102receptor binding IEA--
GO:0005515protein binding ----
GO:0042802identical protein binding IEA--
     
C1QTNF2 for ontologies           About GeneDecksing


Phenotypes:
     1 MGI phenotypic allele for C1qtnf2 (no phenotypes)

C1QTNF2 for phenotypes           About GeneDecksing

Animal Models:
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miRNA
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miRTarBase miRNAs that target C1QTNF2:
hsa-mir-193b-3p (MIRT016479)

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8 qRT-PCR Assays for microRNAs that regulate C1QTNF2:
hsa-miR-1290 hsa-miR-550a hsa-miR-670 hsa-miR-519e hsa-miR-876-5p hsa-miR-339-5p hsa-miR-515-3p hsa-miR-3167
SwitchGear 3'UTR luciferase reporter plasmidC1QTNF2 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
C1QT2_HUMAN, Q9BXJ5: Secreted (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular3
cytosol1
lysosome1
mitochondrion1
nucleus1
peroxisome1
plasma membrane1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005581collagen IEA--
GO:0005615extracellular space IEA--

C1QTNF2 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C1QTNF2
Interactions:

    Search GeneGlobe Interaction Network for C1QTNF2

Gene Ontology (GO): Selected biological process terms (see all 7):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000187activation of MAPK activity IEA--
GO:0045725positive regulation of glycogen biosynthetic process IEA--
GO:0046321positive regulation of fatty acid oxidation IEA--
GO:0046326positive regulation of glucose import IEA--
GO:0051260protein homooligomerization IEA--

C1QTNF2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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  Browse compounds at ApexBio 

Browse Tocris compounds for C1QTNF2 (C1QT2)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for C1QTNF2 gene: 
NM_031908.4  

Unigene Cluster for C1QTNF2:

C1q and tumor necrosis factor related protein 2
Hs.110062  [show with all ESTs]
Unigene Representative Sequence: NM_031908
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000393975(uc003lyd.3)
miRNA
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8 qRT-PCR Assays for microRNAs that regulate C1QTNF2:
hsa-miR-1290 hsa-miR-550a hsa-miR-670 hsa-miR-519e hsa-miR-876-5p hsa-miR-339-5p hsa-miR-515-3p hsa-miR-3167
SwitchGear 3'UTR luciferase reporter plasmidC1QTNF2 3' UTR sequence
Inhib. RNA
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Primer
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  QuantiFast Probe-based Assays in human, mouse, rat C1QTNF2

Additional mRNA sequence: 

AF329836.1 AY358839.1 BC011699.2 BC054506.1 

2 DOTS entries:

DT.101980417  DT.95263550 

Selected AceView cDNA sequences (see all 26):

BF511014 BC054506 AA443206 AI916779 AI288625 AF329836 BQ881020 BQ006349 
NM_031908 BC011699 AY358839 BM675363 BM714600 AA346195 AI038644 BI488418 
BI489428 W79527 AW304481 AA443244 BI822472 AA194106 AW965223 AA732948 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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C1QTNF2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CCACGGCGGT
C1QTNF2 Expression
About this image


C1QTNF2 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Bone (Muscoskeletal System)    fully expand to see all 2 entries
         Endochondral Facial Bones
 
 Dermis (Integumentary System)
C1QTNF2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

C1QTNF2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.110062
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QTNF2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF2 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia C1qtnf21 , 5 C1q and tumor necrosis factor related protein 21, 5 88(n)1
94.12(a)1
  11 (25.72 cM)5
691831  NM_026979.51  NP_081255.11 
 434742765 
chicken
(Gallus gallus)
Aves C1QTNF21 C1q and tumor necrosis factor related protein 2 72.65(n)
80.28(a)
  416156  NM_001277702.1  NP_001264631.1 
lizard
(Anolis carolinensis)
Reptilia C1QTNF26
C1q and tumor necrosis factor related protein 2
75(a)
1 ↔ 1
GL343286.1(1188429-1190063)
tropical clawed frog
(Xenopus tropicalis)
Amphibia LOC1004900361 complement C1q tumor necrosis factor-related protein more 66.07(n)
74.29(a)
  100490036  XM_002940130.2  XP_002940176.1 
zebrafish
(Danio rerio)
Actinopterygii c1qtnf21 C1q and tumor necrosis factor related protein 2 63.47(n)
70.11(a)
  572041  XM_695699.5  XP_700791.1 


ENSEMBL Gene Tree for C1QTNF2 (if available)
TreeFam Gene Tree for C1QTNF2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for C1QTNF2 gene
C1QTNF62  C1QB2  COL10A12  C1QTNF12  C1QTNF9B2  C1QA2  C1QTNF42  COL8A22  
C1QTNF92  C1QTNF52  COL8A12  OTOL12  C1QTNF82  C1QTNF72  C1QC2  ADIPOQ2  
9 SIMAP similar genes for C1QTNF2 using alignment to 2 protein entries:     C1QT2_HUMAN (see all proteins):
C1QTNF7    C1QTNF9    C1QTNF9B    OTOL1    C1QA    C1QB
ADIPOQ    C1QC    C1QL3

C1QTNF2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for C1QTNF2 (see all 527)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1429324581,2
--159774309(+) CAAAGC/GGTTAA 1 -- ds50010--------
rs1903141491,2
--159774365(+) AGAAGC/GGAAAG 1 -- ds50010--------
rs1123152041,2
C,F--159774619(+) GGAACC/TATCCC 1 -- ds50011Minor allele frequency- T:0.50CSA 2
rs1142407861,2
C,F--159774624(+) TATCCC/TGTGCA 1 -- ds50011Minor allele frequency- T:0.03WA 118
rs1922538221,2
--159774728(+) GTTTCA/GTGGGT 1 -- ds50010--------
rs1118946191,2
C--159774768(+) TTTTTG/TTTTTT 1 -- ut311Minor allele frequency- T:0.00CSA 1
rs346822441,2
C--159774774(+) TTTTT-/T/T   
   T
/TTT
GTTTT
3 -- cds1 ut311NA 2
rs1411895201,2
--159774879(+) CTCCCG/TCCTCA 1 -- ut310--------
rs100568391,2
C,H--159774912(+) CAGGCG/ACCCAA 1 -- ut31 ese38Minor allele frequency- A:0.00WA NA CSA 14
rs1176730041,2
F--159774920(+) CAACAC/ACACGC 1 -- ut311Minor allele frequency- A:0.03EA 120

HapMap Linkage Disequilibrium report for C1QTNF2 (159774758 - 159797648 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for C1QTNF2:    About this table    
Variant IDTypeSubtypePubMed ID
esv2730977CNV Deletion23290073

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing C1QTNF2
DNA2.0 Custom Variant and Variant Library Synthesis for C1QTNF2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for C1QTNF2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with C1QTNF2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
  3. Weight loss after gastric bypass is associated with a variant at 15q26.1. (PubMed id 23643386)1 Hatoum I.J....Kaplan L.M. (Am. J. Hum. Genet. 2013)
  4. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (Nature 2004)
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  6. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 114898 HGNC: 14325 AceView: C1QTNF2 Ensembl:ENSG00000145861 euGenes: HUgn114898
ECgene: C1QTNF2 H-InvDB: C1QTNF2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for C1QTNF2 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for C1QTNF2 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for C1QTNF2 gene:
Search GeneIP for patents involving C1QTNF2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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