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Aliases for C1QTNF1-AS1 Gene

Subcategory (RNA class) for C1QTNF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C1QTNF1-AS1 Gene

  • C1QTNF1 Antisense RNA 1 2 3 5

External Ids for C1QTNF1-AS1 Gene

Previous GeneCards Identifiers for C1QTNF1-AS1 Gene

  • GC17M077037
  • GC17M077048
  • GC17M079025
  • GC17M079036
  • GC17M079046
  • GC17M079056

Summaries for C1QTNF1-AS1 Gene

GeneCards Summary for C1QTNF1-AS1 Gene

C1QTNF1-AS1 (C1QTNF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF1-AS1 Gene

Genomics for C1QTNF1-AS1 Gene

Regulatory Elements for C1QTNF1-AS1 Gene

Enhancers for C1QTNF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F078441 1.6 FANTOM5 Ensembl ENCODE 5.8 +584.8 584836 2.4 ATF1 MAX ZNF175 BRCA1 RARA ZNF121 FOS ZNF600 PRDM10 CREM PGS1 DNAH17 SOCS3 RNU6-638P C1QTNF1-AS1 CYTH1 USP36 TMC6 GC17M078388 DNAH17-AS1
GH17F079022 1.3 FANTOM5 Ensembl ENCODE 0.8 +2.1 2137 6.5 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 FOS PAF1 ZNF263 SP3 C1QTNF1 ENGASE CANT1 C1QTNF1-AS1
GH17F079033 0.9 Ensembl ENCODE 0.4 -6.6 -6640 1.0 ZBTB8A THRB ZIC2 EGR2 ZNF423 C1QTNF1 BIRC5 C1QTNF1-AS1 ENGASE
GH17F079035 1.4 FANTOM5 Ensembl ENCODE 0.4 -10.1 -10113 3.9 BCOR TBP TAF1 JUN MAX ZMYM3 SIN3A ZIC2 RAD21 RELA C1QTNF1 ENGASE CANT1 BIRC5 CYTH1 USP36 C1QTNF1-AS1
GH17F079042 0.2 ENCODE 0.4 -14.9 -14899 0.2 GTF2F1 CTCF ZNF2 RAD21 TEAD3 ZBTB48 ZNF143 SMC3 PRDM10 RCOR1 C1QTNF1 C1QTNF1-AS1 ENGASE
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C1QTNF1-AS1 Gene

Chromosome:
17
Start:
79,019,209 bp from pter
End:
79,027,655 bp from pter
Size:
8,447 bases
Orientation:
Minus strand

Genomic View for C1QTNF1-AS1 Gene

Genes around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF1-AS1 Gene

Proteins for C1QTNF1-AS1 Gene

Post-translational modifications for C1QTNF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1QTNF1-AS1 Gene

Domains & Families for C1QTNF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Function for C1QTNF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF1-AS1 Gene

Localization for C1QTNF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C1QTNF1-AS1 Gene

Pathways & Interactions for C1QTNF1-AS1 Gene

SuperPathways for C1QTNF1-AS1 Gene

No Data Available

Interacting Proteins for C1QTNF1-AS1 Gene

Gene Ontology (GO) - Biological Process for C1QTNF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF1-AS1 Gene

Transcripts for C1QTNF1-AS1 Gene

mRNA/cDNA for C1QTNF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF1-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF1-AS1 Gene

GeneLoc Exon Structure for
C1QTNF1-AS1
ECgene alternative splicing isoforms for
C1QTNF1-AS1

Expression for C1QTNF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1QTNF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF1-AS1 Gene

This gene is overexpressed in Adrenal Gland (x22.9), Spleen (x9.1), Heart - Atrial Appendage (x6.2), and Heart - Left Ventricle (x4.0).
genes like me logo Genes that share expression patterns with C1QTNF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C1QTNF1-AS1 Gene

Orthologs for C1QTNF1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1QTNF1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF1-AS1 35
  • 100 (a)
OneToOne
Species where no ortholog for C1QTNF1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1QTNF1-AS1 Gene

ENSEMBL:
Gene Tree for C1QTNF1-AS1 (if available)
TreeFam:
Gene Tree for C1QTNF1-AS1 (if available)

Paralogs for C1QTNF1-AS1 Gene

No data available for Paralogs for C1QTNF1-AS1 Gene

Variants for C1QTNF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10559581 -- 79,028,902(+) TTAAG(-/GT)GTGTG intron-variant, upstream-variant-2KB
rs111582384 -- 79,024,858(+) CTTTC(G/T)GAGGG intron-variant, upstream-variant-2KB
rs111634409 -- 79,027,521(+) TGCTG(A/G)GGTCC intron-variant, nc-transcript-variant
rs111808388 -- 79,027,082(+) TGGGC(-/G)GGGGG intron-variant
rs112351516 -- 79,028,914(+) TGTGC(A/G)TGCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057193 CNV gain 25217958
nsv470610 CNV loss 18288195
nsv523650 CNV loss 19592680

Variation tolerance for C1QTNF1-AS1 Gene

Gene Damage Index Score: 0.12; 2.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1QTNF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Disorders for C1QTNF1-AS1 Gene

Relevant External Links for C1QTNF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1QTNF1-AS1

No disorders were found for C1QTNF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF1-AS1 Gene

Publications for C1QTNF1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for C1QTNF1-AS1 Gene

Sources for C1QTNF1-AS1 Gene

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