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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

C1QL4 Gene

protein-coding   GIFtS: 40
GCID: GC12M049726

Complement Component 1, Q Subcomponent-Like 4

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Complement Component 1, Q Subcomponent-Like 41 2
CTRP112 3
C1q And Tumor Necrosis Factor-Related Protein 112 3
C1q/TNF-Related Protein 112 3
C1QTNF112
Complement C1q-Like Protein 42

External Ids:    HGNC: 314161   Entrez Gene: 3387612   Ensembl: ENSG000001868977   OMIM: 6152295   UniProtKB: Q86Z233   

Export aliases for C1QL4 gene to outside databases

Previous GC identifers: GC12M048013 GC12M046756


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for C1QL4 Gene: 
C1QL4 (complement component 1, q subcomponent-like 4) is a protein-coding gene. Diseases associated with C1QL4 include neuronitis. An important paralog of this gene is CBLN2.

UniProtKB/Swiss-Prot: C1QL4_HUMAN, Q86Z23
Function: May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on
inhibitory synapses (By similarity). May inhibit adipocyte differentiation at an early stage of the process (By
similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.2  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the C1QL4 gene promoter:
         GR   STAT1   GR-beta   STAT1beta   STAT1alpha   S8   STAT2   STAT3   PPAR-gamma2   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC1QL4 promoter sequence
   Search SABiosciences Chromatin IP Primers for C1QL4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C1QL4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13.12   Ensembl cytogenetic band:  12q13.12   HGNC cytogenetic band: 12q13.12

C1QL4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QL4 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M049726:  view genomic region     (about GC identifiers)

Start:
49,726,200 bp from pter      End:
49,730,971 bp from pter
Size:
4,772 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: C1QL4_HUMAN, Q86Z23 (See protein sequence)
Recommended Name: Complement C1q-like protein 4 precursor  
Size: 238 amino acids; 24909 Da
Subunit: Forms homooligomers, predominantly dimers or trimers (By similarity). Forms heterooligomers with C1QL1,
C1QL2 and C1QL3, when proteins are coexpressed; this interaction does not occur after secretion (By similarity).
Interacts with BAI3 (By similarity)
Subcellular location: Secreted (By similarity)

Explore the universe of human proteins at neXtProt for C1QL4: NX_Q86Z23

Explore proteomics data for C1QL4 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q86Z23

  • C1QL4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    C1QL4 Protein Expression
    REFSEQ proteins: NP_001008224.1  
    ENSEMBL proteins: 
     ENSP00000335285  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005581collagen IEA--

    C1QL4 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    2 InterPro protein domains:
     IPR008983 Tumour_necrosis_fac-like_dom
     IPR001073 C1q

    Graphical View of Domain Structure for InterPro Entry Q86Z23

    ProtoNet protein and cluster: Q86Z23

    2 Blocks protein domains:
    IPB001073 Complement C1q protein
    IPB008160 Collagen triple helix repeat


    UniProtKB/Swiss-Prot: C1QL4_HUMAN, Q86Z23
    Similarity: Contains 1 C1q domain
    Similarity: Contains 1 collagen-like domain


    C1QL4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: C1QL4_HUMAN, Q86Z23
    Function: May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on
    inhibitory synapses (By similarity). May inhibit adipocyte differentiation at an early stage of the process (By
    similarity)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    C1QL4 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for C1QL4:
     Actin fiber cells 

    Animal Models:
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    SwitchGear 3'UTR luciferase reporter plasmidC1QL4 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1QL4

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for C1QL4

    Search CenterWatch for drugs/clinical trials and news about C1QL4

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for C1QL4 gene: 
    NM_001008223.1  

    Unigene Cluster for C1QL4:

    Complement component 1, q subcomponent-like 4
    Hs.380386  [show with all ESTs]
    Unigene Representative Sequence: BC110812
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000334221(uc001rtz.1)
    miRNA
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    hsa-miR-513a-5p hsa-miR-566 hsa-miR-218-1* hsa-let-7a-2* hsa-miR-3918 hsa-miR-3137 hsa-let-7g* hsa-miR-186
    SwitchGear 3'UTR luciferase reporter plasmidC1QL4 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C1QL4

    Additional mRNA sequence: 

    AF466366.1 BC110812.1 

    1 DOTS entry:

    DT.101977763 

    12 AceView cDNA sequences:

    CR600274 AF466366 AL518440 BM847021 BM762336 AL561826 BE888168 AL529898 
    BM844470 AL518439 AL529897 AL519829 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    C1QL4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGAACGGAC
    C1QL4 Expression
    About this image


    See C1QL4 Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.380386

    UniProtKB/Swiss-Prot: C1QL4_HUMAN, Q86Z23
    Tissue specificity: Highest expression levels in testis and adipose tissue, lower levels in skeletal muscle and
    kidney

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QL4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for C1QL4 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia C1ql41 , 5 complement component 1, q subcomponent-like 41, 5 88.24(n)1
    96.64(a)1
      15 (55.84 cM)5
    2396591  NM_001024702.11  NP_001019873.11 
     990847545 
    lizard
    (Anolis carolinensis)
    Reptilia C1QL46
    Uncharacterized protein
    79(a)
    1 ↔ 1
    GL343198.1(2342813-2389198)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.129052 Xenopus laevis transcribed sequence with moderate similarity more 78.54(n)    BJ092454.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5592881 complement C1q-like protein 4-like 70.72(n)
    77.39(a)
      559288  XM_682618.2  XP_687710.2 


    ENSEMBL Gene Tree for C1QL4 (if available)
    TreeFam Gene Tree for C1QL4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for C1QL4 gene
    CBLN22  C1QL32  CBLN12  C1QTNF32  CAPRIN12  C1QL22  CBLN32  CAPRIN22  
    C1QL12  CBLN42  
    6 SIMAP similar genes for C1QL4 using alignment to 1 protein entry:     C1QL4_HUMAN:
    C1QL3    C1QL1    C1QL2    OTOL1    C1QC    C1QTNF3

    C1QL4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/146 SNPs in C1QL4 are shown (see all 146)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1497713331,2
    C--49726027(+) AGAAG-/CACACAC 1 -- ds50010--------
    rs1827025291,2
    --49726053(+) CCAGAA/GGCAGG 1 -- ds50010--------
    rs1159226251,2
    C,F--49726108(+) CAGCAC/AGGTAG 1 -- ds50011Minor allele frequency- A:0.03WA 118
    rs104004351,2
    C,F,A,H--49726118(+) GGAGCT/CCTTTA 1 -- ds500124Minor allele frequency- C:0.22NS EA NA WA CSA 2556
    rs775560081,2
    C,F--49726158(+) CCCCCC/TAGTCT 1 -- ds50012Minor allele frequency- T:0.07CSA WA 120
    rs1123418331,2
    C--49726255(+) GGATAG/-AGGGG 1 -- ut311Minor allele frequency- -:0.50CSA 2
    rs599905551,2
    C--49726326(+) TTCACA/GGGAAG 1 -- ut313Minor allele frequency- G:0.08WA NA 240
    rs1132634641,2
    C,F--49726438(+) CTTCTG/CTTGCC 1 -- ut311Minor allele frequency- C:0.50NA 2
    rs1858642111,2
    --49726523(+) AGTCCC/TGCTAT 1 -- ut310--------
    rs1513155401,2
    C--49726649(+) GGTCT-/CCTC  
            
    CCTCC
    1 -- ut310--------

    HapMap Linkage Disequilibrium report for C1QL4 (49726200 - 49730971 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for C1QL4:    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv1423n71CNV Loss21882294
    nsv826368CNV Gain20364138
    nsv832405CNV Gain17160897

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 615229    OMIM disorders: --

    2 diseases for C1QL4:    About MalaCards
    neuronitis    


    C1QL4 for disorders           About GeneDecksing


    Export disorders for C1QL4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for C1QL4 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with C1QL4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. C1q/tumor necrosis factor-related protein 11 (CTRP11), a novel adipose stroma-derived regulator of adipogenesis. (PubMed id 23449976)2 Wei Z....Wong G.W. (2013)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    4. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 338761 HGNC: 31416 AceView: LOC338761 Ensembl:ENSG00000186897 euGenes: HUgn338761
    ECgene: C1QL4 H-InvDB: C1QL4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for C1QL4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for C1QL4 gene:
    Search GeneIP for patents involving C1QL4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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