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C1QL2 Gene

protein-coding   GIFtS: 42
GCID: GC02M119914

Complement Component 1, Q Subcomponent-Like 2

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Complement Component 1, Q Subcomponent-Like 21 2     C1q/TNF-Related Protein 102 3
CTRP102 3 5     C1QTNF102 5
C1q And Tumor Necrosis Factor Related Protein 101 2     C1q-Domain Containing Protein2
C1q And Tumor Necrosis Factor-Related Protein 102 3     Complement C1q-Like Protein 22

External Ids:    HGNC: 241811   Entrez Gene: 1652572   Ensembl: ENSG000001441197   OMIM: 6143305   UniProtKB: Q7Z5L33   

Export aliases for C1QL2 gene to outside databases

Previous GC identifers: GC02M120009 GC02M119630 GC02M112238


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C1QL2 Gene:
C1QL2 (complement component 1, q subcomponent-like 2) is a protein-coding gene. Diseases associated with C1QL2 include hepatitis b, and hepatitis. GO annotations related to this gene include identical protein binding. An important paralog of this gene is CBLN2.

UniProtKB/Swiss-Prot: C1QL2_HUMAN, Q7Z5L3
Function: May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on
inhibitory synapses (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000002.12  NT_005403.18  NC_018913.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C1QL2 gene promoter:
         SREBP-1c   NRSF form 1   NRSF form 2   Evi-1   SREBP-1b   SREBP-1a   POU2F1   c-Myb   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC1QL2 promoter sequence
   Search Chromatin IP Primers for C1QL2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C1QL2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q14.2   Ensembl cytogenetic band:  2q14.2   HGNC cytogenetic band: 2q14.2

C1QL2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C1QL2 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M119914:  view genomic region     (about GC identifiers)

Start:
119,913,819 bp from pter      End:
119,916,471 bp from pter
Size:
2,653 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: C1QL2_HUMAN, Q7Z5L3 (See protein sequence)
Recommended Name: Complement C1q-like protein 2 precursor  
Size: 287 amino acids; 29468 Da
Subunit: Forms homotrimers which can further assemble to form higher-order oligomeric complexes (By similarity).
Interacts with BAI3 (By similarity). May interact with FAM132B (By similarity). Forms heterooligomers with C1QL3
and C1QL4, when proteins are coexpressed; this interaction does not occur after secretion (By similarity)

Explore the universe of human proteins at neXtProt for C1QL2: NX_Q7Z5L3

Explore proteomics data for C1QL2 at MOPED


See C1QL2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_872334.2  
ENSEMBL proteins: 
 ENSP00000272520  

C1QL2 Human Recombinant Protein Products:

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR008983 Tumour_necrosis_fac-like_dom
 IPR008160 Collagen
 IPR001073 C1q

Graphical View of Domain Structure for InterPro Entry Q7Z5L3

ProtoNet protein and cluster: Q7Z5L3

2 Blocks protein domains:
IPB001073 Complement C1q protein
IPB008160 Collagen triple helix repeat


UniProtKB/Swiss-Prot: C1QL2_HUMAN, Q7Z5L3
Similarity: Contains 1 C1q domain
Similarity: Contains 1 collagen-like domain


C1QL2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: C1QL2_HUMAN, Q7Z5L3
Function: May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on
inhibitory synapses (By similarity)

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
GO:0042802identical protein binding IEA--
     
C1QL2 for ontologies           About GeneDecksing


Animal Models:
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SwitchGear 3'UTR luciferase reporter plasmidC1QL2 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
C1QL2_HUMAN, Q7Z5L3: Secreted (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular3

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region ----
GO:0005581collagen IEA--

C1QL2 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C1QL2
Interactions:

    Search GeneGlobe Interaction Network for C1QL2

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for C1QL2 (ENSP000002725204) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
SERPING1ENSP000002784074STRING: ENSP00000278407
About this table

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0051259protein oligomerization IEA--

C1QL2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for C1QL2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for C1QL2 gene: 
NM_182528.3  

Unigene Cluster for C1QL2:

Complement component 1, q subcomponent-like 2
Hs.433493  [show with all ESTs]
Unigene Representative Sequence: AF525315
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000272520(uc002tlo.2)
miRNA
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hsa-miR-548d-3p hsa-miR-548am hsa-miR-548x hsa-miR-155 hsa-miR-518a-5p
SwitchGear 3'UTR luciferase reporter plasmidC1QL2 3' UTR sequence
Inhib. RNA
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GenScript: all cDNA clones in your preferred vector: C1QL2 (NM_182528)
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  QuantiFast Probe-based Assays in human, mouse, rat C1QL2

Additional mRNA sequence: 

AF525315.1 BC043189.1 BC067896.1 BC142965.1 

2 DOTS entries:

DT.101980881  DT.120999572 

22 AceView cDNA sequences:

BM704090 CR622997 CR591276 NM_182528 BC043189 AF525315 BC067896 AL567669 
BM665458 CD672775 BU608529 AI206331 BI601803 AL539110 BM711545 AL536619 
BX442279 BI601805 BU726838 AL566412 BM690309 AA724034 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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C1QL2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
C1QL2 Expression
About this image


C1QL2 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 3) fully expand
 
 Brain (Nervous System)    fully expand to see all 15 entries
         Adult Oligodendrocyte Precursor Cells Lateral Ventricle
         Thalamus
         Olfactory Bulb   
 
 Neurons
         GABAergic Amacrine Cells Inner Nuclear Layer
 
 Eye (Sensory Organs)
         GABAergic Amacrine Cells Inner Nuclear Layer
C1QL2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

C1QL2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.433493
    Custom PCR Arrays for C1QL2
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C1QL2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for C1QL2 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia C1ql21 , 5 complement component 1, q subcomponent-like 21, 5 86.53(n)1
94.08(a)1
  1 (52.68 cM)5
2263591  NM_207233.11  NP_997116.11 
 1203405825 
lizard
(Anolis carolinensis)
Reptilia C1QL26
complement component 1, q subcomponent-like 2
96(a)
1 ↔ 1
GL343497.1(348186-361583)
zebrafish
(Danio rerio)
Actinopterygii c1ql21 complement component 1, q subcomponent-like 2 73.79(n)
82.66(a)
  100005110  XM_001920670.3  XP_001920705.2 
fruit fly
(Drosophila melanogaster)
Insecta Capr6
Caprin
5(a)
1 → many
3L(18661253-18666260)


ENSEMBL Gene Tree for C1QL2 (if available)
TreeFam Gene Tree for C1QL2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for C1QL2 gene
CBLN22  C1QL32  CBLN12  C1QTNF32  CAPRIN12  ENSG000002732942  CBLN32  CAPRIN22  
C1QL12  CBLN42  C1QL42  
7 SIMAP similar genes for C1QL2 using alignment to 2 protein entries:     C1QL2_HUMAN (see all proteins):
REEP1    C1QL1    C1QL3    C1QL4    C1QB    ADIPOQ
C1QC

C1QL2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for C1QL2 (see all 107)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1165347981,2
F--119913411(+) CCCATA/GGATGC 1 -- ds50011Minor allele frequency- G:0.03WA 118
rs48485381,2
--119913729(+) AGATGA/GGCCTA 1 -- ds50010--------
rs1442377731,2
C--119913870(+) GGAGGC/GAATGC 1 -- ut310--------
rs1878598821,2
--119913873(+) GGGAAA/TGCGGT 1 -- ut310--------
rs1465481031,2
--119913948(+) GGAAAG/TCTGCA 1 -- ut310--------
rs1912846871,2
--119913997(+) CCCGCA/GCTCCC 1 -- ut310--------
rs67580511,2
C,F,A,H--119914101(+) TCCAGT/GCTAAT 1 -- ut31 ese323Minor allele frequency- G:0.46NS EA NA WA 2634
rs1409148081,2
C--119914115(+) GTTTGA/CAAAGT 1 -- ut310--------
rs1837705571,2
--119914241(+) GGGCAG/TGGAGG 1 -- ut310--------
rs2017495181,2
C--119914337(+) GAGACC/TGGGCG 1 -- ut310--------

HapMap Linkage Disequilibrium report for C1QL2 (119913819 - 119916471 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for C1QL2:    About this table    
Variant IDTypeSubtypePubMed ID
nsv874957CNV Loss21882294
nsv829637CNV Gain20364138
nsv459119CNV Gain19166990
nsv874958CNV Gain21882294

Site Specific Mutation Identification with PCR Assays
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DNA2.0 Custom Variant and Variant Library Synthesis for C1QL2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 614330    OMIM disorders: --

3 diseases for C1QL2:    
About MalaCards
hepatitis b    hepatitis    neuronitis


C1QL2 for disorders           About GeneDecksing

Genetic Association Database (GAD): C1QL2
Human Genome Epidemiology (HuGE) Navigator: C1QL2 (1 document)

Export disorders for C1QL2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for C1QL2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with C1QL2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular, biochemical and functional characterizations of C1q/TNF family members: adipose-tissue-selective expression patterns, regulation by PPAR-gamma agonist, cysteine-mediated oligomerizations, combinatorial associations and metabolic functions. (PubMed id 18783346)1, 3 Wong G.W....Lodish H.F. (Biochem. J. 2008)
  2. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (Genes Immun. 2010)
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  5. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 165257 HGNC: 24181 AceView: C1QL2 Ensembl:ENSG00000144119 euGenes: HUgn165257
ECgene: C1QL2 H-InvDB: C1QL2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for C1QL2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for C1QL2 gene:
Search GeneIP for patents involving C1QL2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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