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Aliases for C1QL1 Gene

Aliases for C1QL1 Gene

  • Complement C1q Like 1 2 3 5
  • C1q And Tumor Necrosis Factor-Related Protein 14 3 4
  • Complement Component 1, Q Subcomponent-Like 1 2 3
  • C1q/TNF-Related Protein 14 3 4
  • C1QRF 3 4
  • CRF 3 4
  • Complement Component 1 Q Subcomponent-Like 1 4
  • C1q-Related Factor 3
  • C1QTNF14 3
  • CTRP14 4

External Ids for C1QL1 Gene

Previous GeneCards Identifiers for C1QL1 Gene

  • GC17M043513
  • GC17M040392
  • GC17M043037
  • GC17M038803

Summaries for C1QL1 Gene

GeneCards Summary for C1QL1 Gene

C1QL1 (Complement C1q Like 1) is a Protein Coding gene. An important paralog of this gene is C1QL3.

UniProtKB/Swiss-Prot for C1QL1 Gene

  • May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on inhibitory synapses (By similarity).

Gene Wiki entry for C1QL1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QL1 Gene

Genomics for C1QL1 Gene

Regulatory Elements for C1QL1 Gene

Enhancers for C1QL1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G045020 1.5 Ensembl ENCODE dbSUPER 11.9 -53.1 -53149 2.5 ATF1 CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ZNF143 ZNF207 DCAKD NMT1 C1QL1 GFAP FAM187A EFTUD2 CCDC103 KIF18B HEXIM2 ENSG00000224505
GH17G044818 1.5 Ensembl ENCODE dbSUPER 10.2 +147.9 147882 3.4 ARNT ZNF493 ZFP64 FEZF1 ZNF2 ZNF121 KLF7 FOS ZNF202 SP3 ASB16-AS1 GJC1 GPATCH8 ENSG00000260793 EFTUD2 HIGD1B GFAP C1QL1 LINC02210 MEIOC
GH17G045059 1.4 ENCODE dbSUPER 10.6 -93.5 -93471 4.9 MLX CREB3L1 ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 SSRP1 DCAKD ENSG00000262372 ENSG00000224505 ASB16-AS1 EFTUD2 GFAP C1QL1 GPATCH8 LINC02210 MAP3K14-AS1
GH17G045029 1.2 ENCODE dbSUPER 11.2 -62.9 -62884 3.1 PKNOX1 FOXA2 ATF1 ARNT SIN3A ZNF48 TCF12 GATA2 ZNF263 SP5 DCAKD NMT1 KIF18B GFAP C1QL1 HEXIM2 ENSG00000224505 CCDC103 EFTUD2 FAM187A
GH17G045006 1.1 FANTOM5 dbSUPER 11.7 -38.9 -38880 0.3 CTCF MAX ZIC2 RAD21 YY1 ZFHX2 PATZ1 SMC3 MAZ HLF KIF18B C1QL1 CCDC103 FAM187A EFTUD2 GFAP NMT1 DCAKD GC17M045006 GC17M044982
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1QL1 on UCSC Golden Path with GeneCards custom track

Promoters for C1QL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094839 -124 401 RB1 ZBTB40 ZEB1 ZNF366 ZNF391 KLF13 SP3 ZBTB2 CEBPB REST

Genomic Location for C1QL1 Gene

Chromosome:
17
Start:
44,959,693 bp from pter
End:
44,968,276 bp from pter
Size:
8,584 bases
Orientation:
Minus strand

Genomic View for C1QL1 Gene

Genes around C1QL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QL1 Gene

Proteins for C1QL1 Gene

  • Protein details for C1QL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75973-C1QRF_HUMAN
    Recommended name:
    C1q-related factor
    Protein Accession:
    O75973

    Protein attributes for C1QL1 Gene

    Size:
    258 amino acids
    Molecular mass:
    26453 Da
    Quaternary structure:
    • Interacts with ADGRB3. Forms heterooligomers with C1QL4, when proteins are coexpressed; this interaction does not occur after secretion.

neXtProt entry for C1QL1 Gene

Post-translational modifications for C1QL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1QL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1QL1 Gene

Domains & Families for C1QL1 Gene

Gene Families for C1QL1 Gene

Suggested Antigen Peptide Sequences for C1QL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QL1: view

No data available for UniProtKB/Swiss-Prot for C1QL1 Gene

Function for C1QL1 Gene

Molecular function for C1QL1 Gene

UniProtKB/Swiss-Prot Function:
May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on inhibitory synapses (By similarity).

Gene Ontology (GO) - Molecular Function for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005102 receptor binding IEA --
GO:0005515 protein binding IPI 19666007
genes like me logo Genes that share ontologies with C1QL1: view
genes like me logo Genes that share phenotypes with C1QL1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for C1QL1

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QL1 Gene

Localization for C1QL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QL1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1QL1 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005576 extracellular region IEA --
GO:0005581 collagen trimer IEA --
GO:0005737 cytoplasm IEA --
GO:0043083 synaptic cleft IEA --
genes like me logo Genes that share ontologies with C1QL1: view

Pathways & Interactions for C1QL1 Gene

SuperPathways for C1QL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007626 locomotory behavior NAS 9878755
GO:0016322 neuron remodeling IEA --
GO:0061743 motor learning IEA --
GO:0099558 maintenance of synapse structure IEA --
genes like me logo Genes that share ontologies with C1QL1: view

No data available for Pathways by source and SIGNOR curated interactions for C1QL1 Gene

Drugs & Compounds for C1QL1 Gene

No Compound Related Data Available

Transcripts for C1QL1 Gene

mRNA/cDNA for C1QL1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(113) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C1QL1 Gene

Complement component 1, q subcomponent-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1QL1 Gene

No ASD Table

Relevant External Links for C1QL1 Gene

GeneLoc Exon Structure for
C1QL1
ECgene alternative splicing isoforms for
C1QL1

Expression for C1QL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1QL1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QL1 Gene

This gene is overexpressed in Brain - Amygdala (x4.3).

Protein differential expression in normal tissues from HIPED for C1QL1 Gene

This gene is overexpressed in Retina (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C1QL1 Gene



Protein tissue co-expression partners for C1QL1 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1QL1 Gene:

C1QL1

SOURCE GeneReport for Unigene cluster for C1QL1 Gene:

Hs.134012

mRNA Expression by UniProt/SwissProt for C1QL1 Gene:

O75973-C1QRF_HUMAN
Tissue specificity: Expressed in brainstem.

Evidence on tissue expression from TISSUES for C1QL1 Gene

  • Nervous system(3)
  • Pancreas(2.4)
genes like me logo Genes that share expression patterns with C1QL1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QL1 Gene

Orthologs for C1QL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for C1QL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QL1 34 35
  • 99.73 (n)
dog
(Canis familiaris)
Mammalia C1QL1 34 35
  • 94.57 (n)
oppossum
(Monodelphis domestica)
Mammalia C1QL1 35
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia C1ql1 34 16 35
  • 93.41 (n)
cow
(Bos Taurus)
Mammalia C1QL1 34 35
  • 93.28 (n)
rat
(Rattus norvegicus)
Mammalia C1ql1 34
  • 92.77 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 8 (a)
ManyToMany
chicken
(Gallus gallus)
Aves C1QL1 35
  • 87 (a)
OneToOne
C1QL4 34
  • 82.47 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia c1ql1 34
  • 73.22 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC556064 34
  • 71.91 (n)
c1ql3b 35
  • 67 (a)
OneToMany
C1QL1 (2 of 2) 35
  • 64 (a)
OneToMany
Dr.16893 34
fruit fly
(Drosophila melanogaster)
Insecta Capr 35
  • 5 (a)
OneToMany
Species where no ortholog for C1QL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1QL1 Gene

ENSEMBL:
Gene Tree for C1QL1 (if available)
TreeFam:
Gene Tree for C1QL1 (if available)

Paralogs for C1QL1 Gene

(8) SIMAP similar genes for C1QL1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C1QL1: view

Variants for C1QL1 Gene

Sequence variations from dbSNP and Humsavar for C1QL1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000160920 -- 44,967,748(+) TGGCT(C/T)ACCCT reference, missense
rs1000236506 -- 44,960,029(+) GGAGG(A/G)CCTAG utr-variant-3-prime
rs1000903668 -- 44,961,340(+) GTGAT(C/T)CCAGC intron-variant
rs1001254748 -- 44,959,590(+) GCACC(A/T)GGTTT downstream-variant-500B
rs1001322378 -- 44,969,873(+) CTCTG(G/T)GCTAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C1QL1 Gene

Variant ID Type Subtype PubMed ID
nsv1070405 CNV deletion 25765185
nsv1126459 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv527788 CNV loss 19592680
nsv575101 CNV loss 21841781
nsv575102 CNV gain 21841781
nsv833457 CNV loss 17160897
nsv953902 CNV deletion 24416366

Variation tolerance for C1QL1 Gene

Residual Variation Intolerance Score: 53.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.50; 10.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C1QL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QL1 Gene

Disorders for C1QL1 Gene

Relevant External Links for C1QL1

Genetic Association Database (GAD)
C1QL1
Human Genome Epidemiology (HuGE) Navigator
C1QL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1QL1

No disorders were found for C1QL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QL1 Gene

Publications for C1QL1 Gene

  1. Cloning and characterization of CRF, a novel C1q-related factor, expressed in areas of the brain involved in motor function. (PMID: 9878755) Berube N.G. … Pereira-Smith O.M. (Brain Res. Mol. Brain Res. 1999) 2 3 4 22 64
  2. CTRP8 and CTRP9B are novel proteins that hetero-oligomerize with C1q/TNF family members. (PMID: 19666007) Peterson J.M. … Wong G.W. (Biochem. Biophys. Res. Commun. 2009) 3 22 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. Notch3 interactome analysis identified WWP2 as a negative regulator of Notch3 signaling in ovarian cancer. (PMID: 25356737) Jung J.G. … Wang T.L. (PLoS Genet. 2014) 3 64

Products for C1QL1 Gene

Sources for C1QL1 Gene

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