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Aliases for C1GALT1C1L Gene

Aliases for C1GALT1C1L Gene

  • C1GALT1-Specific Chaperone 1 Like 2 3 5
  • C1GALT1-Specific Chaperone 1-Like Protein 3
  • HCG1645220 3

External Ids for C1GALT1C1L Gene

Summaries for C1GALT1C1L Gene

GeneCards Summary for C1GALT1C1L Gene

C1GALT1C1L (C1GALT1-Specific Chaperone 1 Like) is a Protein Coding gene. An important paralog of this gene is C1GALT1C1.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1GALT1C1L Gene

Genomics for C1GALT1C1L Gene

Regulatory Elements for C1GALT1C1L Gene

Enhancers for C1GALT1C1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G043285 0.7 dbSUPER 7.4 +390.0 390040 1.3 SOX13 GATAD2A FOXA2 SAP130 FOXA3 CEBPG RAD21 JUND ATF3 CEBPA PLEKHH2 C1GALT1C1L ENSG00000234936 RNU6-958P
GH02G043676 0.9 ENCODE 0.7 -0.3 -275 0.2 ATF1 FUS SIN3A DMAP1 ZNF48 RARA SLC30A9 GLIS2 FOS THAP11 C1GALT1C1L PIR59407
GH02G043636 0.9 ENCODE 0.3 +38.8 38766 1.7 PKNOX1 ATF1 RB1 ZSCAN4 DEAF1 SIN3A ZNF48 GLIS2 FOS CREM PLEKHH2 C1GALT1C1L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C1GALT1C1L on UCSC Golden Path with GeneCards custom track

Promoters for C1GALT1C1L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000116226 21 1000 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 GLIS2 FOS PAF1 SP3 SP5

Genomic Location for C1GALT1C1L Gene

Chromosome:
2
Start:
43,675,151 bp from pter
End:
43,676,322 bp from pter
Size:
1,172 bases
Orientation:
Minus strand

Genomic View for C1GALT1C1L Gene

Genes around C1GALT1C1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1GALT1C1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1GALT1C1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1GALT1C1L Gene

Proteins for C1GALT1C1L Gene

  • Protein details for C1GALT1C1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DN25-C1C1L_HUMAN
    Recommended name:
    C1GALT1-specific chaperone 1-like protein
    Protein Accession:
    P0DN25

    Protein attributes for C1GALT1C1L Gene

    Size:
    315 amino acids
    Molecular mass:
    36396 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1GALT1C1L Gene

Post-translational modifications for C1GALT1C1L Gene

No Post-translational modifications

Other Protein References for C1GALT1C1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1GALT1C1L Gene

Domains & Families for C1GALT1C1L Gene

Protein Domains for C1GALT1C1L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0DN25

UniProtKB/Swiss-Prot:

C1C1L_HUMAN :
  • Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.
Family:
  • Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.
genes like me logo Genes that share domains with C1GALT1C1L: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for C1GALT1C1L Gene

Function for C1GALT1C1L Gene

Phenotypes for C1GALT1C1L Gene

GenomeRNAi human phenotypes for C1GALT1C1L:
genes like me logo Genes that share phenotypes with C1GALT1C1L: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1GALT1C1L Gene

Localization for C1GALT1C1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1GALT1C1L Gene

Membrane; Single-pass type II membrane protein.

Gene Ontology (GO) - Cellular Components for C1GALT1C1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1GALT1C1L: view

No data available for Subcellular locations from COMPARTMENTS for C1GALT1C1L Gene

Pathways & Interactions for C1GALT1C1L Gene

SuperPathways for C1GALT1C1L Gene

No Data Available

Interacting Proteins for C1GALT1C1L Gene

Gene Ontology (GO) - Biological Process for C1GALT1C1L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1GALT1C1L Gene

Drugs & Compounds for C1GALT1C1L Gene

No Compound Related Data Available

Transcripts for C1GALT1C1L Gene

mRNA/cDNA for C1GALT1C1L Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1GALT1C1L Gene

No ASD Table

Relevant External Links for C1GALT1C1L Gene

GeneLoc Exon Structure for
C1GALT1C1L
ECgene alternative splicing isoforms for
C1GALT1C1L

Expression for C1GALT1C1L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1GALT1C1L Gene

NURSA nuclear receptor signaling pathways regulating expression of C1GALT1C1L Gene:

C1GALT1C1L
genes like me logo Genes that share expression patterns with C1GALT1C1L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1GALT1C1L Gene

Orthologs for C1GALT1C1L Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1GALT1C1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470362 34
  • 99.05 (n)
Species where no ortholog for C1GALT1C1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1GALT1C1L Gene

ENSEMBL:
Gene Tree for C1GALT1C1L (if available)
TreeFam:
Gene Tree for C1GALT1C1L (if available)

Paralogs for C1GALT1C1L Gene

Paralogs for C1GALT1C1L Gene

genes like me logo Genes that share paralogs with C1GALT1C1L: view

Variants for C1GALT1C1L Gene

Sequence variations from dbSNP and Humsavar for C1GALT1C1L Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000260337 -- 43,676,807(+) TCTTC(C/T)ATACT intron-variant, upstream-variant-2KB
rs1000981254 -- 43,677,229(+) CATTC(C/T)TGGGT intron-variant, upstream-variant-2KB
rs1001357607 -- 43,677,297(+) CAGAT(A/G)AACAA intron-variant, upstream-variant-2KB
rs1002984317 -- 43,674,851(+) ATGGT(A/G)GTGTG intron-variant, downstream-variant-500B
rs1006457476 -- 43,674,916(+) GGAGG(C/G)GGAGG intron-variant, downstream-variant-500B

Relevant External Links for C1GALT1C1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1GALT1C1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C1GALT1C1L Gene

Disorders for C1GALT1C1L Gene

Relevant External Links for C1GALT1C1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C1GALT1C1L

No disorders were found for C1GALT1C1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1GALT1C1L Gene

Publications for C1GALT1C1L Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for C1GALT1C1L Gene

Sources for C1GALT1C1L Gene

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