Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C1GALT1C1L Gene

Aliases for C1GALT1C1L Gene

  • C1GALT1-Specific Chaperone 1 Like 2 3 5
  • C1GALT1-Specific Chaperone 1-Like Protein 3
  • HCG1645220 3

External Ids for C1GALT1C1L Gene

Summaries for C1GALT1C1L Gene

GeneCards Summary for C1GALT1C1L Gene

C1GALT1C1L (C1GALT1-Specific Chaperone 1 Like) is a Protein Coding gene. An important paralog of this gene is C1GALT1C1.

Additional gene information for C1GALT1C1L Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1GALT1C1L Gene

Genomics for C1GALT1C1L Gene

GeneHancer (GH) Regulatory Elements for C1GALT1C1L Gene

Promoters and enhancers for C1GALT1C1L Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I043675 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 558.7 +0.0 21 1 ARID4B DMAP1 ZNF48 SLC30A9 GLIS2 ZNF213 FOS SP3 SP5 MIER2 C1GALT1C1L THADA RNU6-1048P PLEKHH2
GH02I043209 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +465.3 465349 2 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B DMAP1 ZNF766 MCM3 SP5 RNU6-1048P PLEKHH2 THADA OXER1 DYNC2LI1 ZFP36L2 C1GALT1C1L LINC02580 GC02P042660
GH02I043285 Enhancer 0.6 dbSUPER 7.4 +390.0 390039 1.3 SOX13 GATAD2A FOXA2 SAP130 FOXA3 CEBPG RAD21 JUND ATF3 CEBPA PLEKHH2 C1GALT1C1L ENSG00000234936 RNU6-958P THADA GC02P042660
GH02I043636 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.3 +38.7 38675 1.9 PKNOX1 ATF1 SIN3A ZNF48 GLIS2 FOS ATF7 SP3 SP5 NFYC PLEKHH2 C1GALT1C1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1GALT1C1L on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1GALT1C1L Gene

Genomic Locations for C1GALT1C1L Gene
chr2:43,675,151-43,676,322
(GRCh38/hg38)
Size:
1,172 bases
Orientation:
Minus strand
chr2:43,902,292-43,903,461
(GRCh37/hg19)

Genomic View for C1GALT1C1L Gene

Genes around C1GALT1C1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1GALT1C1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1GALT1C1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1GALT1C1L Gene

Proteins for C1GALT1C1L Gene

  • Protein details for C1GALT1C1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DN25-C1C1L_HUMAN
    Recommended name:
    C1GALT1-specific chaperone 1-like protein
    Protein Accession:
    P0DN25

    Protein attributes for C1GALT1C1L Gene

    Size:
    315 amino acids
    Molecular mass:
    36396 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1GALT1C1L Gene

Post-translational modifications for C1GALT1C1L Gene

No Post-translational modifications

Other Protein References for C1GALT1C1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1GALT1C1L Gene

Domains & Families for C1GALT1C1L Gene

Gene Families for C1GALT1C1L Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for C1GALT1C1L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0DN25

UniProtKB/Swiss-Prot:

C1C1L_HUMAN :
  • Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.
Family:
  • Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.
genes like me logo Genes that share domains with C1GALT1C1L: view

No data available for Suggested Antigen Peptide Sequences for C1GALT1C1L Gene

Function for C1GALT1C1L Gene

Phenotypes for C1GALT1C1L Gene

GenomeRNAi human phenotypes for C1GALT1C1L:
genes like me logo Genes that share phenotypes with C1GALT1C1L: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1GALT1C1L Gene

Localization for C1GALT1C1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1GALT1C1L Gene

Membrane; Single-pass type II membrane protein.

Gene Ontology (GO) - Cellular Components for C1GALT1C1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C1GALT1C1L: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for C1GALT1C1L Gene

Pathways & Interactions for C1GALT1C1L Gene

SuperPathways for C1GALT1C1L Gene

No Data Available

Interacting Proteins for C1GALT1C1L Gene

Gene Ontology (GO) - Biological Process for C1GALT1C1L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1GALT1C1L Gene

Drugs & Compounds for C1GALT1C1L Gene

No Compound Related Data Available

Transcripts for C1GALT1C1L Gene

mRNA/cDNA for C1GALT1C1L Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1GALT1C1L Gene

No ASD Table

Relevant External Links for C1GALT1C1L Gene

GeneLoc Exon Structure for
C1GALT1C1L
ECgene alternative splicing isoforms for
C1GALT1C1L

Expression for C1GALT1C1L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1GALT1C1L Gene

NURSA nuclear receptor signaling pathways regulating expression of C1GALT1C1L Gene:

C1GALT1C1L
genes like me logo Genes that share expression patterns with C1GALT1C1L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1GALT1C1L Gene

Orthologs for C1GALT1C1L Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1GALT1C1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470362 33
  • 99.05 (n)
Species where no ortholog for C1GALT1C1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1GALT1C1L Gene

ENSEMBL:
Gene Tree for C1GALT1C1L (if available)
TreeFam:
Gene Tree for C1GALT1C1L (if available)

Paralogs for C1GALT1C1L Gene

Paralogs for C1GALT1C1L Gene

genes like me logo Genes that share paralogs with C1GALT1C1L: view

Variants for C1GALT1C1L Gene

Sequence variations from dbSNP and Humsavar for C1GALT1C1L Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000260337 -- 43,676,807(-) T/C upstream_transcript_variant
rs1000981254 -- 43,677,229(-) T/C upstream_transcript_variant
rs1001357607 -- 43,677,297(-) A/G upstream_transcript_variant
rs1002984317 -- 43,674,851(-) G/A downstream_transcript_variant
rs1006457476 -- 43,674,916(-) C/A/G downstream_transcript_variant

Additional Variant Information for C1GALT1C1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1GALT1C1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C1GALT1C1L Gene

Disorders for C1GALT1C1L Gene

Additional Disease Information for C1GALT1C1L

No disorders were found for C1GALT1C1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1GALT1C1L Gene

Publications for C1GALT1C1L Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for C1GALT1C1L Gene

Sources for C1GALT1C1L Gene

Content
Loading form....