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Aliases for C19orf84 Gene

Aliases for C19orf84 Gene

  • Chromosome 19 Open Reading Frame 84 2 3 5

External Ids for C19orf84 Gene

Previous GeneCards Identifiers for C19orf84 Gene

  • GC19M051892

Summaries for C19orf84 Gene

GeneCards Summary for C19orf84 Gene

C19orf84 (Chromosome 19 Open Reading Frame 84) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf84 Gene

Genomics for C19orf84 Gene

Regulatory Elements for C19orf84 Gene

Enhancers for C19orf84 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G051393 1.5 FANTOM5 ENCODE 20.5 -4.5 -4474 2.8 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ZFP64 ARID4B SIN3A YY1 ZNF143 ZNF766 ZNF577 SPACA6P-AS ZNF836 C19orf84 ZNF432 ZNF616 ZNF880 ENSG00000268015 ZNF175
GH19G051388 1.2 Ensembl ENCODE 21 +0.4 352 3.2 HDGF ATF1 CREB3L1 ARNT ARID4B DMAP1 ZNF48 ZNF263 JUNB ZNF592 C19orf84 LIM2
GH19G051386 1.1 Ensembl ENCODE 15.2 +3.0 2977 1.4 LEF1 FOXA2 CBX3 SAP130 RAD21 RARA ZNF507 TEAD3 POLR2A EGR1 C19orf84 LIM2 NKG7
GH19G051847 0.3 FANTOM5 22.2 -457.3 -457269 0.5 CLDND2 ZNF610 C19orf84 ENSG00000269483 ZNF616 SIGLEC14 LOC105369197 VN1R98P
GH19G051392 0.4 FANTOM5 7.3 -2.3 -2334 0.2 ZNF592 C19orf84 SIGLEC14 LOC105372446
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C19orf84 on UCSC Golden Path with GeneCards custom track

Genomic Location for C19orf84 Gene

Chromosome:
19
Start:
51,388,289 bp from pter
End:
51,390,574 bp from pter
Size:
2,286 bases
Orientation:
Minus strand

Genomic View for C19orf84 Gene

Genes around C19orf84 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf84 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf84 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf84 Gene

Proteins for C19orf84 Gene

  • Protein details for C19orf84 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    I3L1E1-CS084_HUMAN
    Recommended name:
    Uncharacterized protein C19orf84
    Protein Accession:
    I3L1E1

    Protein attributes for C19orf84 Gene

    Size:
    186 amino acids
    Molecular mass:
    19614 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf84 Gene

Post-translational modifications for C19orf84 Gene

No Post-translational modifications

Other Protein References for C19orf84 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf84 Gene

Domains & Families for C19orf84 Gene

Protein Domains for C19orf84 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf84: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf84 Gene

Function for C19orf84 Gene

Phenotypes for C19orf84 Gene

GenomeRNAi human phenotypes for C19orf84:
genes like me logo Genes that share phenotypes with C19orf84: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C19orf84 Gene

Localization for C19orf84 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C19orf84 Gene

Pathways & Interactions for C19orf84 Gene

SuperPathways for C19orf84 Gene

No Data Available

Interacting Proteins for C19orf84 Gene

Gene Ontology (GO) - Biological Process for C19orf84 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf84 Gene

Drugs & Compounds for C19orf84 Gene

No Compound Related Data Available

Transcripts for C19orf84 Gene

mRNA/cDNA for C19orf84 Gene

(1) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf84 Gene

No ASD Table

Relevant External Links for C19orf84 Gene

GeneLoc Exon Structure for
C19orf84
ECgene alternative splicing isoforms for
C19orf84

Expression for C19orf84 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C19orf84 Gene

mRNA differential expression in normal tissues according to GTEx for C19orf84 Gene

This gene is overexpressed in Testis (x42.9).

Protein differential expression in normal tissues from HIPED for C19orf84 Gene

This gene is overexpressed in Placenta (42.9), Esophagus (18.7), and Lung (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C19orf84 Gene



Protein tissue co-expression partners for C19orf84 Gene

NURSA nuclear receptor signaling pathways regulating expression of C19orf84 Gene:

C19orf84
genes like me logo Genes that share expression patterns with C19orf84: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C19orf84 Gene

Orthologs for C19orf84 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C19orf84 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC748798 34
  • 98.92 (n)
cow
(Bos Taurus)
Mammalia LOC100848300 34
  • 73.7 (n)
mouse
(Mus musculus)
Mammalia Lim2 35 35
  • 61 (a)
OneToMany
Species where no ortholog for C19orf84 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf84 Gene

ENSEMBL:
Gene Tree for C19orf84 (if available)
TreeFam:
Gene Tree for C19orf84 (if available)

Paralogs for C19orf84 Gene

No data available for Paralogs for C19orf84 Gene

Variants for C19orf84 Gene

Sequence variations from dbSNP and Humsavar for C19orf84 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs113926789 Uncertain significance 51,387,939(+) TGCCC(A/G)AGCCC intron-variant, utr-variant-5-prime
rs539594698 Uncertain significance 51,387,953(+) TTCTG(C/T)CACGG intron-variant, utr-variant-5-prime
rs568064524 Uncertain significance 51,387,905(+) TCTCA(C/T)GCCTG intron-variant
rs886054601 Uncertain significance 51,387,941(-) GAGGG(C/G)TCGGG intron-variant, downstream-variant-500B, utr-variant-5-prime
rs1000110447 -- 51,389,792(+) TATTC(C/T)GAACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C19orf84 Gene

Variant ID Type Subtype PubMed ID
esv21876 CNV loss 19812545
nsv1140251 OTHER inversion 24896259

Variation tolerance for C19orf84 Gene

Gene Damage Index Score: 9.37; 88.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf84 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C19orf84

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf84 Gene

Disorders for C19orf84 Gene

Relevant External Links for C19orf84

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf84

No disorders were found for C19orf84 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf84 Gene

Publications for C19orf84 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for C19orf84 Gene

Sources for C19orf84 Gene

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