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Aliases for C19orf71 Gene

Aliases for C19orf71 Gene

  • Chromosome 19 Open Reading Frame 71 2 3

External Ids for C19orf71 Gene

Previous GeneCards Identifiers for C19orf71 Gene

  • GC19P003488
  • GC19P003304

Summaries for C19orf71 Gene

GeneCards Summary for C19orf71 Gene

C19orf71 (Chromosome 19 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf71 Gene

Genomics for C19orf71 Gene

Regulatory Elements for C19orf71 Gene

Genomic Location for C19orf71 Gene

Start:
3,538,675 bp from pter
End:
3,551,763 bp from pter
Size:
13,089 bases
Orientation:
Plus strand

Genomic View for C19orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf71 Gene

Proteins for C19orf71 Gene

  • Protein details for C19orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NCJ1-CS071_HUMAN
    Recommended name:
    Uncharacterized protein C19orf71
    Protein Accession:
    A6NCJ1
    Secondary Accessions:

    Protein attributes for C19orf71 Gene

    Size:
    209 amino acids
    Molecular mass:
    24176 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf71 Gene

Proteomics data for C19orf71 Gene at MOPED

Post-translational modifications for C19orf71 Gene

No Post-translational modifications

Other Protein References for C19orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf71 Gene

Domains for C19orf71 Gene

Protein Domains for C19orf71 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf71 Gene

Function for C19orf71 Gene

Phenotypes for C19orf71 Gene

GenomeRNAi human phenotypes for C19orf71:
genes like me logo Genes that share phenotypes with C19orf71: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C19orf71 Gene

Localization for C19orf71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf71 Gene COMPARTMENTS Subcellular localization image for C19orf71 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf71 Gene

Pathways for C19orf71 Gene

SuperPathways for C19orf71 Gene

No Data Available

Interacting Proteins for C19orf71 Gene

Gene Ontology (GO) - Biological Process for C19orf71 Gene

None

No data available for Pathways by source for C19orf71 Gene

Transcripts for C19orf71 Gene

mRNA/cDNA for C19orf71 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C19orf71 Gene

Chromosome 19 open reading frame 71:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C19orf71

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf71 Gene

No ASD Table

Relevant External Links for C19orf71 Gene

GeneLoc Exon Structure for
C19orf71
ECgene alternative splicing isoforms for
C19orf71

Expression for C19orf71 Gene

mRNA expression in normal human tissues for C19orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C19orf71 Gene

This gene is overexpressed in Testis (6.5).

SOURCE GeneReport for Unigene cluster for C19orf71 Gene Hs.664978

genes like me logo Genes that share expressions with C19orf71: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for C19orf71 Gene

Orthologs for C19orf71 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C19orf71 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C7H19orf71 35
  • 81.64 (n)
  • 77.29 (a)
C7H19orf71 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20H19orf71 35
  • 83.57 (n)
  • 79.71 (a)
C19orf71 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930404N11Rik 35
  • 71.57 (n)
  • 58.82 (a)
4930404N11Rik 16
4930404N11Rik 36
  • 58 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf71 35
  • 98.72 (n)
  • 98.09 (a)
C19orf71 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC690617 35
  • 71.87 (n)
  • 59.51 (a)
oppossum
(Monodelphis domestica)
Mammalia C19orf71 36
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf71 36
  • 30 (a)
OneToOne
Species with no ortholog for C19orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf71 Gene

ENSEMBL:
Gene Tree for C19orf71 (if available)
TreeFam:
Gene Tree for C19orf71 (if available)

Paralogs for C19orf71 Gene

No data available for Paralogs for C19orf71 Gene

Variants for C19orf71 Gene

Sequence variations from dbSNP and Humsavar for C19orf71 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs7248746 -- 3,538,092(+) CCTAC(C/G)CCGAG upstream-variant-2KB
rs10406138 -- 3,537,979(+) acagc(C/T)atgca upstream-variant-2KB
rs11667273 -- 3,538,109(+) GAGCT(C/T)CTGGG upstream-variant-2KB
rs11878473 -- 3,537,889(+) AGGGC(A/G)GCCTT upstream-variant-2KB
rs73527920 -- 3,537,372(+) AGTGG(C/T)TGGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C19orf71 Gene

Variant ID Type Subtype PubMed ID
nsv910722 CNV Loss 21882294
nsv910723 CNV Loss 21882294
dgv3651n71 CNV Loss 21882294
nsv470114 CNV Loss 18288195
dgv3652n71 CNV Loss 21882294
dgv3653n71 CNV Loss 21882294
dgv3654n71 CNV Loss 21882294
dgv3655n71 CNV Loss 21882294
dgv3656n71 CNV Loss 21882294
nsv910745 CNV Loss 21882294
nsv910746 CNV Loss 21882294
dgv3657n71 CNV Loss 21882294
nsv910748 CNV Loss 21882294

Relevant External Links for C19orf71 Gene

HapMap Linkage Disequilibrium report
C19orf71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf71 Gene

Disorders for C19orf71 Gene

No disorders were found for C19orf71 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for C19orf71 Gene

Publications for C19orf71 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4

Products for C19orf71 Gene

Sources for C19orf71 Gene

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