Aliases for C19orf71 Gene
External Ids for C19orf71 Gene
- HGNC: 34496
- Entrez Gene: 100128569
- Ensembl: ENSG00000183397
- UniProtKB: A6NCJ1
Previous GeneCards Identifiers for C19orf71 Gene
- GC19P003488
- GC19P003304
Summaries for C19orf71 Gene
GeneCards Summary for C19orf71 Gene
C19orf71 (Chromosome 19 Open Reading Frame 71) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf71 Gene
Genomics for C19orf71 Gene
Regulatory Elements for C19orf71 Gene
Enhancers for C19orf71 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C19orf71 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the C19orf71 gene promoter:
Regulatory Element Products
Genomic Location for C19orf71 Gene
- Chromosome:
- 19
- Start:
- 3,539,154 bp from pter
- End:
- 3,544,030 bp from pter
- Size:
- 4,877 bases
- Orientation:
- Plus strand
Genomic View for C19orf71 Gene
Genes around C19orf71 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19p13.3 by Ensembl
- 19p13.3 by Entrez Gene
- 19p13.3 by HGNC
C19orf71 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C19orf71 Gene
Proteins for C19orf71 Gene
-
Protein details for C19orf71 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A6NCJ1-CS071_HUMAN
- Recommended name:
- Uncharacterized protein C19orf71
- Protein Accession:
- A6NCJ1
Protein attributes for C19orf71 Gene
- Size:
- 209 amino acids
- Molecular mass:
- 24176 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for C19orf71 Gene
Other Protein References for C19orf71 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for C19orf71
-
Abcam antibodies for C19orf71
- Invitrogen Antibodies for C19orf71
- Search GeneTex for Antibodies for C19orf71
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C19orf71
- Origene Custom Protein Services for C19orf71
- Novus Biologicals proteins for C19orf71
- Search GeneTex for Proteins for C19orf71
Assay Products
No data available for DME Specific Peptides for C19orf71 Gene
Domains & Families for C19orf71 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf71 Gene
Function for C19orf71 Gene
Phenotypes for C19orf71 Gene
- GenomeRNAi human phenotypes for C19orf71:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C19orf71
-
-
ViGene Biosciences lentiviral particle packaged cDNA for C19orf71 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C19orf71 gene
- Search ViGene Biosciences for C19orf71
CRISPR Products
-
OriGene CRISPR knockouts for C19orf71
-
Santa Cruz Biotechnology (SCBT) CRISPR for C19orf71
- GenScript: Design CRISPR guide RNA sequences for C19orf71
miRNA Products
- Search ViGene Biosciences for C19orf71
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for C19orf71
- Browse OriGene Inhibitory RNA Products For C19orf71
-
ViGene Biosciences ready-to-package AAV shRNAs for C19orf71 gene
Clone Products
-
OriGene ORF clones in human for C19orf71
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C19orf71
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C19orf71
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for C19orf71
-
ViGene Biosciences adenoviral particle packaged cDNA for C19orf71 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C19orf71 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C19orf71 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C19orf71 Gene
Localization for C19orf71 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 2 |
| nucleus | 2 |
| cytosol | 2 |
| peroxisome | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf71 Gene
Pathways & Interactions for C19orf71 Gene
No Data Available
Interacting Proteins for C19orf71 Gene
| Symbol | External ID(s) | Details |
|---|---|---|
| MECP2 |
No data available for Pathways by source and SIGNOR curated interactions for C19orf71 Gene
Transcripts for C19orf71 Gene
mRNA/cDNA for C19orf71 Gene
- (2) REFSEQ mRNAs :
- (0) Additional mRNA sequences :
- -
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C19orf71 Gene
CRISPR Products
-
OriGene CRISPR knockouts for C19orf71
-
Santa Cruz Biotechnology (SCBT) CRISPR for C19orf71
- GenScript: Design CRISPR guide RNA sequences for C19orf71
miRNA Products
- Search ViGene Biosciences for C19orf71
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for C19orf71
- Browse OriGene Inhibitory RNA Products For C19orf71
-
ViGene Biosciences ready-to-package AAV shRNAs for C19orf71 gene
Clone Products
-
OriGene ORF clones in human for C19orf71
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C19orf71
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C19orf71
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C19orf71 Gene
mRNA differential expression in normal tissues according to GTEx for C19orf71 Gene
This gene is overexpressed in Testis (x6.5).
NURSA nuclear receptor signaling pathways regulating expression of C19orf71 Gene:
C19orf71SOURCE GeneReport for Unigene cluster for C19orf71 Gene:
Hs.664978Primer Products
-
OriGene qPCR primer pairs for C19orf71
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C19orf71 Gene
Orthologs for C19orf71 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C19H19orf71 34 |
|
||
| C19orf71 35 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | C20H19orf71 34 |
|
||
| C19orf71 35 |
|
OneToOne | |||
| cow (Bos Taurus) |
Mammalia | C7H19orf71 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC690617 34 |
|
||
| mouse (Mus musculus) |
Mammalia | 4930404N11Rik 34 16 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | C19orf71 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | C19orf71 35 |
|
OneToOne |
- Species where no ortholog for C19orf71 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C19orf71 Gene
No data available for Paralogs for C19orf71 Gene
Variants for C19orf71 Gene
| SNP ID | Clin | Chr 19 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000042985 | -- | 3,537,444(+) | TTGAT(C/T)CTGGA | upstream-variant-2KB | |
| rs1000861814 | -- | 3,539,048(+) | TCCCT(C/T)GAGGC | intron-variant, upstream-variant-2KB | |
| rs1001138191 | -- | 3,544,429(+) | TTCCT(A/G)CTTCC | intron-variant, downstream-variant-500B, utr-variant-3-prime | |
| rs1001295935 | -- | 3,541,534(+) | GCCAG(A/G)CTGGT | intron-variant | |
| rs1001367325 | -- | 3,542,627(+) | CCCCG(C/T)CCCCA | intron-variant, downstream-variant-500B |
Gene Damage Index Score:
6.09;
75.40% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for C19orf71 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C19orf71
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf71 Gene
Disorders for C19orf71 Gene
Relevant External Links for C19orf71
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- C19orf71
No disorders were found for C19orf71 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf71 Gene
Publications for C19orf71 Gene
- The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64
Products for C19orf71 Gene
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- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C19orf71
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- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C19orf71
- Browse OriGene Inhibitory RNA Products For C19orf71
- OriGene qPCR primer pairs for C19orf71
- OriGene CRISPR knockouts for C19orf71
- OriGene ORF clones in human for C19orf71
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Next-day shipping cDNA ORF clone for C19orf71 in any vector
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- Novus Biologicals Antibodies for C19orf71
- Novus Biologicals proteins for C19orf71
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Invitrogen Antibodies for C19orf71
- ViGene Biosciences adenoviral particle packaged cDNA for C19orf71 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C19orf71 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C19orf71 gene
- Search ViGene Biosciences for C19orf71
- Horizon Cell Lines for C19orf71
- Cyagen custom Knockout/knockin (KOKI) mouse models for C19orf71
- VectorBuilder custom plasmid, inducible vectors for C19orf71
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C19orf71
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C19orf71 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer