Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C19orf71 Gene

Aliases for C19orf71 Gene

  • Chromosome 19 Open Reading Frame 71 2 3 5

External Ids for C19orf71 Gene

Previous GeneCards Identifiers for C19orf71 Gene

  • GC19P003488
  • GC19P003304

Summaries for C19orf71 Gene

GeneCards Summary for C19orf71 Gene

C19orf71 (Chromosome 19 Open Reading Frame 71) is a Protein Coding gene.

Additional gene information for C19orf71 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf71 Gene

Genomics for C19orf71 Gene

Regulatory Elements for C19orf71 Gene

Enhancers for C19orf71 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H003550 1.8 FANTOM5 ENCODE dbSUPER 28.8 +16.0 15970 8 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF207 CACTIN ZNF77 CCDC94 C19orf71 ENSG00000267030 HDGFL2 ENSG00000266959 LOC105372244 ENSG00000267063 MFSD12
GH19H003547 1.4 FANTOM5 Ensembl ENCODE 25.7 +9.2 9151 2 BCOR HDGF CTCF ZMYM3 MAX RAD21 HIC1 POLR2A SCRT2 SMC3 MFSD12 C19orf71 FZR1 S1PR4 GNA15 PIAS4 GC19M003546 GC19M003551
GH19H003150 2 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -385.8 -385766 6 HDGF PKNOX1 FOXA2 ARNT YBX1 ZNF766 FOS DEK SP3 JUNB ZNF77 CACTIN GNA11 ZNF555 CACTIN-AS1 DOT1L SPPL2B SF3A2 AP3D1 GNA15
GH19H003784 0.9 ENCODE 25.9 +246.6 246570 2 PTBP1 FUS ZSCAN4 SIN3A KLF17 ZNF2 ZEB1 GLIS2 EGR1 SCRT2 ENSG00000267030 CACTIN ZNF77 CCDC94 C19orf71 ZNF555 ENSG00000267769 CACTIN-AS1 HDGFL2 MATK
GH19H003363 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -171.4 -171417 8 HDGF ARNT YBX1 ZNF2 YY1 ZNF143 SP3 MCM3 JUNB REST CACTIN-AS1 CACTIN ZNF77 CCDC94 PIAS4 ENSG00000267139 ZNF555 LMNB2 APBA3 SLC39A3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C19orf71 on UCSC Golden Path with GeneCards custom track

Genomic Location for C19orf71 Gene

Chromosome:
19
Start:
3,539,154 bp from pter
End:
3,544,030 bp from pter
Size:
4,877 bases
Orientation:
Plus strand

Genomic View for C19orf71 Gene

Genes around C19orf71 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf71 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf71 Gene

Proteins for C19orf71 Gene

  • Protein details for C19orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NCJ1-CS071_HUMAN
    Recommended name:
    Uncharacterized protein C19orf71
    Protein Accession:
    A6NCJ1

    Protein attributes for C19orf71 Gene

    Size:
    209 amino acids
    Molecular mass:
    24176 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf71 Gene

Post-translational modifications for C19orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C19orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf71 Gene

Domains & Families for C19orf71 Gene

Gene Families for C19orf71 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C19orf71 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf71: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf71 Gene

Function for C19orf71 Gene

Phenotypes From GWAS Catalog for C19orf71 Gene

Phenotypes for C19orf71 Gene

GenomeRNAi human phenotypes for C19orf71:
genes like me logo Genes that share phenotypes with C19orf71: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C19orf71
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C19orf71 Gene

Localization for C19orf71 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C19orf71 gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 2
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Endoplasmic reticulum (2)
  • Plasma membrane (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf71 Gene

Pathways & Interactions for C19orf71 Gene

SuperPathways for C19orf71 Gene

No Data Available

Interacting Proteins for C19orf71 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000327950%0d%0a9606.ENSP00000395535%0d%0a
Selected Interacting proteins: ENSP00000327950 for C19orf71 Gene via STRING

Symbol External ID(s) Details
MECP2

Gene Ontology (GO) - Biological Process for C19orf71 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf71 Gene

Drugs & Compounds for C19orf71 Gene

No Compound Related Data Available

Transcripts for C19orf71 Gene

mRNA/cDNA for C19orf71 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C19orf71 Gene

Chromosome 19 open reading frame 71:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C19orf71
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf71 Gene

No ASD Table

Relevant External Links for C19orf71 Gene

GeneLoc Exon Structure for
C19orf71
ECgene alternative splicing isoforms for
C19orf71

Expression for C19orf71 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C19orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C19orf71 Gene

This gene is overexpressed in Testis (x6.5).

NURSA nuclear receptor signaling pathways regulating expression of C19orf71 Gene:

C19orf71

SOURCE GeneReport for Unigene cluster for C19orf71 Gene:

Hs.664978
genes like me logo Genes that share expression patterns with C19orf71: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C19orf71 Gene

Orthologs for C19orf71 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C19orf71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf71 33
  • 98.72 (n)
C19orf71 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20H19orf71 33
  • 83.57 (n)
C19orf71 34
  • 77 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf71 33 34
  • 81.64 (n)
rat
(Rattus norvegicus)
Mammalia LOC690617 33
  • 71.87 (n)
mouse
(Mus musculus)
Mammalia 4930404N11Rik 33 16 34
  • 71.57 (n)
oppossum
(Monodelphis domestica)
Mammalia C19orf71 34
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf71 34
  • 30 (a)
OneToOne
Species where no ortholog for C19orf71 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf71 Gene

ENSEMBL:
Gene Tree for C19orf71 (if available)
TreeFam:
Gene Tree for C19orf71 (if available)

Paralogs for C19orf71 Gene

No data available for Paralogs for C19orf71 Gene

Variants for C19orf71 Gene

Sequence variations from dbSNP and Humsavar for C19orf71 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000042985 -- 3,537,444(+) TTGAT(C/T)CTGGA upstream-variant-2KB
rs1000861814 -- 3,539,048(+) TCCCT(C/T)GAGGC intron-variant, upstream-variant-2KB
rs1001138191 -- 3,544,429(+) TTCCT(A/G)CTTCC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1001295935 -- 3,541,534(+) GCCAG(A/G)CTGGT intron-variant
rs1001367325 -- 3,542,627(+) CCCCG(C/T)CCCCA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C19orf71 Gene

Variant ID Type Subtype PubMed ID
nsv470114 CNV loss 18288195
nsv953948 CNV deletion 24416366

Variation tolerance for C19orf71 Gene

Gene Damage Index Score: 6.09; 75.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf71 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C19orf71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf71 Gene

Disorders for C19orf71 Gene

Relevant External Links for C19orf71

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf71

No disorders were found for C19orf71 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf71 Gene

Publications for C19orf71 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 3 4 60

Products for C19orf71 Gene

Sources for C19orf71 Gene

Content
Loading form....