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Aliases for C19orf54 Gene

Aliases for C19orf54 Gene

  • Chromosome 19 Open Reading Frame 54 2 3

External Ids for C19orf54 Gene

Previous GeneCards Identifiers for C19orf54 Gene

  • GC19M045939
  • GC19M041246
  • GC19M037680

Summaries for C19orf54 Gene

GeneCards Summary for C19orf54 Gene

C19orf54 (Chromosome 19 Open Reading Frame 54) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf54 Gene

Genomics for C19orf54 Gene

Regulatory Elements for C19orf54 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C19orf54 Gene

Start:
40,740,856 bp from pter
End:
40,751,553 bp from pter
Size:
10,698 bases
Orientation:
Minus strand

Genomic View for C19orf54 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf54 Gene

Proteins for C19orf54 Gene

  • Protein details for C19orf54 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5BKX5-CS054_HUMAN
    Recommended name:
    UPF0692 protein C19orf54
    Protein Accession:
    Q5BKX5
    Secondary Accessions:
    • A8MSZ5
    • B4DNU7

    Protein attributes for C19orf54 Gene

    Size:
    351 amino acids
    Molecular mass:
    37779 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C19orf54 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C19orf54 Gene

Proteomics data for C19orf54 Gene at MOPED

Post-translational modifications for C19orf54 Gene

  • Ubiquitination at Lys189
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for C19orf54 Gene

Domains for C19orf54 Gene

Protein Domains for C19orf54 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C19orf54 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5BKX5

UniProtKB/Swiss-Prot:

CS054_HUMAN :
  • Q5BKX5
Family:
  • Belongs to the UPF0692 family.
genes like me logo Genes that share domains with C19orf54: view

No data available for Gene Families for C19orf54 Gene

Function for C19orf54 Gene

Animal Model Products

CRISPR Products

miRNA for C19orf54 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C19orf54 Gene

Localization for C19orf54 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf54 Gene COMPARTMENTS Subcellular localization image for C19orf54 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf54 Gene

Pathways for C19orf54 Gene

SuperPathways for C19orf54 Gene

No Data Available

Interacting Proteins for C19orf54 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000367564%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000367564 for C19orf54 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C19orf54 Gene

None

No data available for Pathways by source for C19orf54 Gene

Transcripts for C19orf54 Gene

Unigene Clusters for C19orf54 Gene

Chromosome 19 open reading frame 54:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C19orf54

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C19orf54
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf54 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e · 7f ^ 8a · 8b ^ 9
SP1: - - - - -
SP2: - - -
SP3:
SP4:
SP5: - - - -
SP6: - - -
SP7: -

Relevant External Links for C19orf54 Gene

GeneLoc Exon Structure for
C19orf54
ECgene alternative splicing isoforms for
C19orf54

Expression for C19orf54 Gene

mRNA expression in normal human tissues for C19orf54 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C19orf54 Gene

SOURCE GeneReport for Unigene cluster for C19orf54 Gene Hs.585105

genes like me logo Genes that share expressions with C19orf54: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C19orf54 Gene

Orthologs for C19orf54 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf54 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf54 35
  • 99.24 (n)
  • 98.29 (a)
C19orf54 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C18H19orf54 35
  • 84.48 (n)
  • 82.47 (a)
C19orf54 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C19orf54 36
  • 81 (a)
OneToOne
C1H19orf54 35
  • 85.85 (n)
  • 86.32 (a)
mouse
(Mus musculus)
Mammalia BC024978 35
  • 82.56 (n)
  • 81.85 (a)
BC024978 16
BC024978 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C19orf54 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf54 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf54 35
  • 60.23 (n)
  • 55.94 (a)
zebrafish
(Danio rerio)
Actinopterygii C18H19orf54 36
  • 44 (a)
OneToOne
zgc:153119 35
  • 55.77 (n)
  • 49.43 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG33108 36
  • 27 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea K07A1.3 36
  • 24 (a)
OneToOne
Species with no ortholog for C19orf54:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C19orf54 Gene

ENSEMBL:
Gene Tree for C19orf54 (if available)
TreeFam:
Gene Tree for C19orf54 (if available)

Paralogs for C19orf54 Gene

Selected SIMAP similar genes for C19orf54 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with C19orf54: view

No data available for Paralogs for C19orf54 Gene

Variants for C19orf54 Gene

Sequence variations from dbSNP and Humsavar for C19orf54 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2369302 -- 40,745,275(+) AGTGG(G/T)CGTAT intron-variant
rs2604872 -- 40,745,080(+) CAAGG(C/G)GAGAG intron-variant
rs3745213 -- 40,742,104(+) GCTGA(C/T)GCAGT utr-variant-3-prime, downstream-variant-500B, missense, reference, intron-variant
rs3745214 -- 40,742,173(+) AGTGA(A/G)ATGAC utr-variant-3-prime, reference, missense, intron-variant
rs3745215 -- 40,742,891(+) GTTAC(A/G)GTGAC intron-variant

Relevant External Links for C19orf54 Gene

HapMap Linkage Disequilibrium report
C19orf54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C19orf54 Gene

Disorders for C19orf54 Gene

No disorders were found for C19orf54 Gene.

No data available for UniProtKB/Swiss-Prot for C19orf54 Gene

Publications for C19orf54 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for C19orf54 Gene

Sources for C19orf54 Gene

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