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Aliases for C19orf53 Gene

Aliases for C19orf53 Gene

  • Chromosome 19 Open Reading Frame 53 2 3 5
  • Leydig Cell Tumor 10 KDa Protein Homolog 2 3
  • HSPC023 3
  • LYDG10 3

External Ids for C19orf53 Gene

Previous GeneCards Identifiers for C19orf53 Gene

  • GC19P013885
  • GC19P013456

Summaries for C19orf53 Gene

GeneCards Summary for C19orf53 Gene

C19orf53 (Chromosome 19 Open Reading Frame 53) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C19orf53 Gene

  • May have a potential role in hypercalcemia of malignancy.

Additional gene information for C19orf53 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf53 Gene

Genomics for C19orf53 Gene

Regulatory Elements for C19orf53 Gene

Enhancers for C19orf53 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H013833 1.8 FANTOM5 ENCODE dbSUPER 11.7 +70.4 70405 23.1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ZNF610 CCDC130 ZNF333 TRMT1 MRI1 DDX39A DCAF15 RFX1 SYCE2 MIR181C ENSG00000267735
GH19H013773 1.2 ENCODE 16.8 +0.5 505 2.7 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B MRI1 C19orf53 MIR181C ENSG00000267735 CCDC130 ADGRL1 SYCE2 NANOS3 ZNF333 TRMT1
GH19H013780 1.1 Ensembl ENCODE 17.4 +7.5 7479 1.9 BCOR KLF1 ZSCAN26 KLF17 ZMYM3 ZNF2 FOSL1 ZNF664 HIC1 ZNF121 C19orf53 SNRPGP15 MISP3 GC19P013795
GH19H013793 1.3 ENCODE dbSUPER 13.2 +21.7 21680 5.5 HDGF PKNOX1 FOXA2 ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF143 ZNF207 LOC284454 DDX39A C19orf53 MRI1 MIR23A MIR27A MIR24-2 DCAF15 RFX1 FARSA
GH19H013787 1 Ensembl ENCODE 16 +14.9 14862 4.1 BCOR JUN ZMYM3 MAX CEBPG ZNF121 POLR2A ADNP RFX1 ZNF687 C19orf53 MIR23A MIR24-2 MIR27A MRI1 MISP3 GC19P013795
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C19orf53 on UCSC Golden Path with GeneCards custom track

Promoters for C19orf53 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107433 632 1201 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1

Genomic Locations for C19orf53 Gene

Genomic Locations for C19orf53 Gene
chr19:13,774,168-13,778,773
(GRCh38/hg38)
Size:
4,606 bases
Orientation:
Plus strand
chr19:13,884,982-13,889,587
(GRCh37/hg19)

Genomic View for C19orf53 Gene

Genes around C19orf53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf53 Gene

Proteins for C19orf53 Gene

  • Protein details for C19orf53 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UNZ5-L10K_HUMAN
    Recommended name:
    Leydig cell tumor 10 kDa protein homolog
    Protein Accession:
    Q9UNZ5
    Secondary Accessions:
    • B2R4J9

    Protein attributes for C19orf53 Gene

    Size:
    99 amino acids
    Molecular mass:
    10577 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf53 Gene

Post-translational modifications for C19orf53 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C19orf53 Gene

No data available for DME Specific Peptides for C19orf53 Gene

Domains & Families for C19orf53 Gene

Gene Families for C19orf53 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C19orf53 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C19orf53 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UNZ5

UniProtKB/Swiss-Prot:

L10K_HUMAN :
  • Belongs to the UPF0390 family.
Family:
  • Belongs to the UPF0390 family.
genes like me logo Genes that share domains with C19orf53: view

Function for C19orf53 Gene

Molecular function for C19orf53 Gene

UniProtKB/Swiss-Prot Function:
May have a potential role in hypercalcemia of malignancy.

Phenotypes From GWAS Catalog for C19orf53 Gene

genes like me logo Genes that share phenotypes with C19orf53: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C19orf53 Gene

Localization for C19orf53 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C19orf53 gene
Compartment Confidence
nucleus 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoli (3)
  • Nucleus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for C19orf53 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with C19orf53: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C19orf53 Gene

Pathways & Interactions for C19orf53 Gene

SuperPathways for C19orf53 Gene

No Data Available

Interacting Proteins for C19orf53 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000465432%0d%0a9606.ENSP00000261396%0d%0a
Selected Interacting proteins: ENSP00000465432 Q9UNZ5-L10K_HUMAN for C19orf53 Gene via STRING IID

Gene Ontology (GO) - Biological Process for C19orf53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf53 Gene

Drugs & Compounds for C19orf53 Gene

No Compound Related Data Available

Transcripts for C19orf53 Gene

Unigene Clusters for C19orf53 Gene

Chromosome 19 open reading frame 53:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf53 Gene

No ASD Table

Relevant External Links for C19orf53 Gene

GeneLoc Exon Structure for
C19orf53
ECgene alternative splicing isoforms for
C19orf53

Expression for C19orf53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C19orf53 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C19orf53 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (51.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C19orf53 Gene



Protein tissue co-expression partners for C19orf53 Gene

NURSA nuclear receptor signaling pathways regulating expression of C19orf53 Gene:

C19orf53

SOURCE GeneReport for Unigene cluster for C19orf53 Gene:

Hs.231616

Evidence on tissue expression from TISSUES for C19orf53 Gene

  • Blood(4.2)
  • Intestine(2.5)
  • Nervous system(2)
genes like me logo Genes that share expression patterns with C19orf53: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C19orf53 Gene

Orthologs for C19orf53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C19orf53 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19orf53 34
  • 100 (a)
OneToOne
C19H19orf53 33
  • 99.66 (n)
dog
(Canis familiaris)
Mammalia C20H19orf53 33
  • 83.33 (n)
C19orf53 34
  • 81 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf53 33 34 34
  • 82.08 (n)
mouse
(Mus musculus)
Mammalia D8Ertd738e 33 16 34
  • 80.09 (n)
rat
(Rattus norvegicus)
Mammalia LOC288913 33
  • 75.27 (n)
oppossum
(Monodelphis domestica)
Mammalia C19orf53 34
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C19orf53 34
  • 66 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C1H19orf53 34
  • 59 (a)
OneToOne
Species where no ortholog for C19orf53 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C19orf53 Gene

ENSEMBL:
Gene Tree for C19orf53 (if available)
TreeFam:
Gene Tree for C19orf53 (if available)

Paralogs for C19orf53 Gene

Pseudogenes.org Pseudogenes for C19orf53 Gene

genes like me logo Genes that share paralogs with C19orf53: view

No data available for Paralogs for C19orf53 Gene

Variants for C19orf53 Gene

Sequence variations from dbSNP and Humsavar for C19orf53 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000400241 -- 13,774,793(+) TGGAG(C/T)CCGGG intron-variant
rs1000524220 -- 13,779,174(+) GGTCC(C/T)GCATA downstream-variant-500B
rs1000765052 -- 13,776,696(+) TCCCA(A/G)TAATA intron-variant
rs1000771175 -- 13,774,561(+) CGGGG(C/T)CCAAG downstream-variant-500B, reference, synonymous-codon
rs1001762923 -- 13,775,258(+) GGGCT(C/T)AAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf53 Gene

Variant ID Type Subtype PubMed ID
esv3893166 CNV gain 25118596
nsv833757 CNV loss 17160897

Variation tolerance for C19orf53 Gene

Residual Variation Intolerance Score: 88.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.11; 93.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C19orf53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf53 Gene

Disorders for C19orf53 Gene

Relevant External Links for C19orf53

Human Genome Epidemiology (HuGE) Navigator
C19orf53
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf53

No disorders were found for C19orf53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf53 Gene

Publications for C19orf53 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 2 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C … Emili A (Nature 2015) 3 60
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60

Products for C19orf53 Gene

Sources for C19orf53 Gene

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