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Aliases for C19orf52 Gene

Aliases for C19orf52 Gene

  • Chromosome 19 Open Reading Frame 52 2 3

External Ids for C19orf52 Gene

Summaries for C19orf52 Gene

GeneCards Summary for C19orf52 Gene

C19orf52 (Chromosome 19 Open Reading Frame 52) is a Protein Coding gene. Diseases associated with C19orf52 include malaria.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf52 Gene

Genomics for C19orf52 Gene

Genomic Location for C19orf52 Gene

Start:
10,928,733 bp from pter
End:
10,933,535 bp from pter
Size:
4,803 bases
Orientation:
Plus strand

Genomic View for C19orf52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf52 Gene

Regulatory Elements for C19orf52 Gene

Proteins for C19orf52 Gene

  • Protein details for C19orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSF4-CS052_HUMAN
    Recommended name:
    Uncharacterized protein C19orf52
    Protein Accession:
    Q9BSF4
    Secondary Accessions:
    • Q96EY6
    • Q96IT8

    Protein attributes for C19orf52 Gene

    Size:
    260 amino acids
    Molecular mass:
    29233 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf52 Gene

Proteomics data for C19orf52 Gene at MOPED

Post-translational modifications for C19orf52 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys24 and Lys216

Other Protein References for C19orf52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf52 Gene

Domains for C19orf52 Gene

Protein Domains for C19orf52 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf52: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf52 Gene

Function for C19orf52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C19orf52 Gene

Localization for C19orf52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf52 Gene COMPARTMENTS Subcellular localization image for C19orf52 gene
Compartment Confidence
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf52 Gene

Pathways for C19orf52 Gene

SuperPathways for C19orf52 Gene

No Data Available

Interacting Proteins for C19orf52 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000270502%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000270502 for C19orf52 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C19orf52 Gene

None

No data available for Pathways by source for C19orf52 Gene

Transcripts for C19orf52 Gene

mRNA/cDNA for C19orf52 Gene

Unigene Clusters for C19orf52 Gene

Chromosome 19 open reading frame 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf52 Gene

No ASD Table

Relevant External Links for C19orf52 Gene

GeneLoc Exon Structure for
C19orf52
ECgene alternative splicing isoforms for
C19orf52

Expression for C19orf52 Gene

mRNA expression in normal human tissues for C19orf52 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C19orf52 Gene

SOURCE GeneReport for Unigene cluster for C19orf52 Gene Hs.164026

genes like me logo Genes that share expressions with C19orf52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C19orf52 Gene

Orthologs for C19orf52 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf52 35
  • 99.36 (n)
  • 98.85 (a)
C19orf52 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf52 35
  • 85.26 (n)
  • 85.77 (a)
C7H19orf52 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C19orf52 36
  • 84 (a)
OneToOne
C20H19orf52 35
  • 86.41 (n)
  • 83.85 (a)
mouse
(Mus musculus)
Mammalia 1810026J23Rik 35
  • 79.36 (n)
  • 81.15 (a)
1810026J23Rik 16
1810026J23Rik 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C19orf52 36
  • 65 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309188 35
  • 78.85 (n)
  • 82.69 (a)
lizard
(Anolis carolinensis)
Reptilia C19orf52 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf52 35
  • 59.74 (n)
  • 52.66 (a)
zebrafish
(Danio rerio)
Actinopterygii C3H19orf52 36
  • 42 (a)
OneToOne
zgc:110046 35
  • 52.38 (n)
  • 47.77 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001454 35
  • 48.31 (n)
  • 36.71 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14270 35
  • 46.85 (n)
  • 29.05 (a)
CG14270 36
  • 25 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R04F11.5 36
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 33 (a)
OneToOne
Species with no ortholog for C19orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C19orf52 Gene

ENSEMBL:
Gene Tree for C19orf52 (if available)
TreeFam:
Gene Tree for C19orf52 (if available)

Paralogs for C19orf52 Gene

No data available for Paralogs for C19orf52 Gene

Variants for C19orf52 Gene

Sequence variations from dbSNP and Humsavar for C19orf52 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs537675098 -- 10,930,740(+) GCTTA(A/G)GAGTT downstream-variant-500B
rs570134496 -- 10,930,707(+) TATTT(A/G)GAAGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C19orf52 Gene

Variant ID Type Subtype PubMed ID
nsv911050 CNV Loss 21882294
nsv833749 CNV Loss 17160897
nsv911051 CNV Loss 21882294

Relevant External Links for C19orf52 Gene

HapMap Linkage Disequilibrium report
C19orf52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf52 Gene

Disorders for C19orf52 Gene

(1) MalaCards Diseases for C19orf52 Gene

Search for C19orf52 Gene in MalaCards »
genes like me logo Genes that share disorders with C19orf52: view

No data available for UniProtKB/Swiss-Prot for C19orf52 Gene

Publications for C19orf52 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  4. Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. (PMID: 21163940) Soler-LA^pez M. … Aloy P. (Genome Res. 2011) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for C19orf52 Gene

Sources for C19orf52 Gene

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