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Aliases for C19orf52 Gene

Aliases for C19orf52 Gene

  • Chromosome 19 Open Reading Frame 52 2 3 5

External Ids for C19orf52 Gene

Previous GeneCards Identifiers for C19orf52 Gene

  • GC19P010901
  • GC19P011039
  • GC19P010617

Summaries for C19orf52 Gene

GeneCards Summary for C19orf52 Gene

C19orf52 (Chromosome 19 Open Reading Frame 52) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf52 Gene

Genomics for C19orf52 Gene

Regulatory Elements for C19orf52 Gene

Promoters for C19orf52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C19orf52 on UCSC Golden Path with GeneCards custom track

Genomic Location for C19orf52 Gene

Chromosome:
19
Start:
10,928,733 bp from pter
End:
10,933,535 bp from pter
Size:
4,803 bases
Orientation:
Plus strand

Genomic View for C19orf52 Gene

Genes around C19orf52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf52 Gene

Proteins for C19orf52 Gene

  • Protein details for C19orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSF4-CS052_HUMAN
    Recommended name:
    Uncharacterized protein C19orf52
    Protein Accession:
    Q9BSF4
    Secondary Accessions:
    • Q96EY6
    • Q96IT8

    Protein attributes for C19orf52 Gene

    Size:
    260 amino acids
    Molecular mass:
    29233 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf52 Gene

Proteomics data for C19orf52 Gene at MOPED

Post-translational modifications for C19orf52 Gene

  • Ubiquitination at Lys 24 and Lys 216
  • Modification sites at PhosphoSitePlus

Other Protein References for C19orf52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf52 Gene

Domains & Families for C19orf52 Gene

Protein Domains for C19orf52 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf52: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf52 Gene

Function for C19orf52 Gene

Phenotypes for C19orf52 Gene

GenomeRNAi human phenotypes for C19orf52:
genes like me logo Genes that share phenotypes with C19orf52: view

Animal Model Products

CRISPR Products

miRNA for C19orf52 Gene

miRTarBase miRNAs that target C19orf52

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C19orf52 Gene

Localization for C19orf52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf52 Gene COMPARTMENTS Subcellular localization image for C19orf52 gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C19orf52 Gene

Pathways & Interactions for C19orf52 Gene

SuperPathways for C19orf52 Gene

No Data Available

Interacting Proteins for C19orf52 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000270502%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000270502 for C19orf52 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C19orf52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf52 Gene

Drugs & Compounds for C19orf52 Gene

No Compound Related Data Available

Transcripts for C19orf52 Gene

mRNA/cDNA for C19orf52 Gene

Unigene Clusters for C19orf52 Gene

Chromosome 19 open reading frame 52:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf52 Gene

No ASD Table

Relevant External Links for C19orf52 Gene

GeneLoc Exon Structure for
C19orf52
ECgene alternative splicing isoforms for
C19orf52

Expression for C19orf52 Gene

mRNA expression in normal human tissues for C19orf52 Gene

Protein differential expression in normal tissues from HIPED for C19orf52 Gene

This gene is overexpressed in Breast (38.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C19orf52 Gene



SOURCE GeneReport for Unigene cluster for C19orf52 Gene Hs.164026

genes like me logo Genes that share expression patterns with C19orf52: view

Protein tissue co-expression partners for C19orf52 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C19orf52 Gene

Orthologs for C19orf52 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf52 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C7H19orf52 35
  • 85.26 (n)
  • 85.77 (a)
C7H19orf52 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20H19orf52 35
  • 86.41 (n)
  • 83.85 (a)
C19orf52 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1810026J23Rik 35
  • 79.36 (n)
  • 81.15 (a)
1810026J23Rik 16
1810026J23Rik 36
  • 80 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf52 35
  • 99.36 (n)
  • 98.85 (a)
C19orf52 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309188 35
  • 78.85 (n)
  • 82.69 (a)
oppossum
(Monodelphis domestica)
Mammalia C19orf52 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C19orf52 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf52 35
  • 59.74 (n)
  • 52.66 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:110046 35
  • 52.38 (n)
  • 47.77 (a)
C3H19orf52 36
  • 42 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001454 35
  • 48.31 (n)
  • 36.71 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14270 35
  • 46.85 (n)
  • 29.05 (a)
CG14270 36
  • 25 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R04F11.5 36
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 33 (a)
OneToOne
Species with no ortholog for C19orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C19orf52 Gene

ENSEMBL:
Gene Tree for C19orf52 (if available)
TreeFam:
Gene Tree for C19orf52 (if available)

Paralogs for C19orf52 Gene

No data available for Paralogs for C19orf52 Gene

Variants for C19orf52 Gene

Structural Variations from Database of Genomic Variants (DGV) for C19orf52 Gene

Variant ID Type Subtype PubMed ID
nsv911050 CNV Loss 21882294
nsv833749 CNV Loss 17160897
nsv911051 CNV Loss 21882294

Variation tolerance for C19orf52 Gene

Gene Damage Index Score: 0.91; 18.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf52 Gene

HapMap Linkage Disequilibrium report
C19orf52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for C19orf52 Gene

Disorders for C19orf52 Gene

Relevant External Links for C19orf52

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf52

No disorders were found for C19orf52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf52 Gene

Publications for C19orf52 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. (PMID: 21163940) Soler-LA^pez M. … Aloy P. (Genome Res. 2011) 3

Products for C19orf52 Gene

Sources for C19orf52 Gene

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