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Aliases for C19orf47 Gene

Aliases for C19orf47 Gene

  • Chromosome 19 Open Reading Frame 47 2 3

External Ids for C19orf47 Gene

Previous GeneCards Identifiers for C19orf47 Gene

  • GC19M045517
  • GC19M040826
  • GC19M037262

Summaries for C19orf47 Gene

GeneCards Summary for C19orf47 Gene

C19orf47 (Chromosome 19 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf47 Gene

Genomics for C19orf47 Gene

Regulatory Elements for C19orf47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C19orf47 Gene

Start:
40,319,536 bp from pter
End:
40,348,527 bp from pter
Size:
28,992 bases
Orientation:
Minus strand

Genomic View for C19orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf47 Gene

Proteins for C19orf47 Gene

  • Protein details for C19orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9M1-CS047_HUMAN
    Recommended name:
    Uncharacterized protein C19orf47
    Protein Accession:
    Q8N9M1
    Secondary Accessions:
    • Q8IZ33
    • Q8N0V9

    Protein attributes for C19orf47 Gene

    Size:
    422 amino acids
    Molecular mass:
    44746 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C19orf47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C19orf47 Gene

Proteomics data for C19orf47 Gene at MOPED

Post-translational modifications for C19orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C19orf47 Gene

Domains for C19orf47 Gene

Protein Domains for C19orf47 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf47 Gene

Function for C19orf47 Gene

Gene Ontology (GO) - Molecular Function for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C19orf47: view

Animal Model Products

CRISPR Products

miRNA for C19orf47 Gene

miRTarBase miRNAs that target C19orf47

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C19orf47 Gene

Localization for C19orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf47 Gene COMPARTMENTS Subcellular localization image for C19orf47 gene
Compartment Confidence
nucleus 4
cytosol 1

Gene Ontology (GO) - Cellular Components for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with C19orf47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C19orf47 Gene

Pathways for C19orf47 Gene

SuperPathways for C19orf47 Gene

No Data Available

Interacting Proteins for C19orf47 Gene

Gene Ontology (GO) - Biological Process for C19orf47 Gene

None

No data available for Pathways by source for C19orf47 Gene

Transcripts for C19orf47 Gene

Unigene Clusters for C19orf47 Gene

Chromosome 19 open reading frame 47:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C19orf47

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b
SP1: - - - -
SP2: - -
SP3: -
SP4: - -
SP5: -
SP6: -

Relevant External Links for C19orf47 Gene

GeneLoc Exon Structure for
C19orf47
ECgene alternative splicing isoforms for
C19orf47

Expression for C19orf47 Gene

mRNA expression in normal human tissues for C19orf47 Gene

mRNA differential expression in normal tissues according to GTEx for C19orf47 Gene

This gene is overexpressed in Muscle - Skeletal (8.8) and Heart - Left Ventricle (5.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C19orf47 Gene

SOURCE GeneReport for Unigene cluster for C19orf47 Gene Hs.631557

genes like me logo Genes that share expressions with C19orf47: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C19orf47 Gene

Orthologs for C19orf47 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf47 35
  • 99.53 (n)
  • 99.29 (a)
C19orf47 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C18H19orf47 35
  • 87.83 (n)
  • 92.58 (a)
C19orf47 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C19orf47 36
  • 93 (a)
OneToOne
C1H19orf47 35
  • 91.75 (n)
  • 94.95 (a)
mouse
(Mus musculus)
Mammalia 2310022A10Rik 35
  • 83.83 (n)
  • 85.5 (a)
2310022A10Rik 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C19orf47 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1307554 35
  • 84.58 (n)
  • 86.25 (a)
lizard
(Anolis carolinensis)
Reptilia C19orf47 36
  • 62 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6739 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf47 35
  • 63.31 (n)
  • 68.63 (a)
Str.1068 35
zebrafish
(Danio rerio)
Actinopterygii C18H19orf47 36
  • 50 (a)
OneToOne
si:ch211-160d20.3 35
  • 61.38 (n)
  • 62.61 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG16812 36
  • 22 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F53F8.5 36
  • 20 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6676 36
  • 25 (a)
OneToOne
Species with no ortholog for C19orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C19orf47 Gene

ENSEMBL:
Gene Tree for C19orf47 (if available)
TreeFam:
Gene Tree for C19orf47 (if available)

Paralogs for C19orf47 Gene

genes like me logo Genes that share paralogs with C19orf47: view

No data available for Paralogs for C19orf47 Gene

Variants for C19orf47 Gene

Sequence variations from dbSNP and Humsavar for C19orf47 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1962639 -- 40,341,204(-) GGCGC(A/G)TGCCA intron-variant
rs1991460 -- 40,327,162(-) GTGGC(A/G/T)CATGC intron-variant
rs3745195 -- 40,336,622(+) ATGAG(A/G)TAGGG intron-variant
rs3745196 -- 40,341,665(+) AGTGA(C/T)GAGGC intron-variant
rs4239507 -- 40,341,007(+) TCAGA(C/T)TTTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf47 Gene

Variant ID Type Subtype PubMed ID
dgv1083e1 CNV Complex 17122850
nsv833831 CNV Loss 17160897
dgv3867n71 CNV Loss 21882294

Relevant External Links for C19orf47 Gene

HapMap Linkage Disequilibrium report
C19orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf47 Gene

Disorders for C19orf47 Gene

No disorders were found for C19orf47 Gene.

No data available for UniProtKB/Swiss-Prot for C19orf47 Gene

Publications for C19orf47 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  4. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  5. Two-hybrid analysis identifies PSMD11, a non-ATPase subunit of the proteasome, as a novel interaction partner of AMP-activated protein kinase. (PMID: 19616115) Moreno D. … Sanz P. (Int. J. Biochem. Cell Biol. 2009) 3

Products for C19orf47 Gene

Sources for C19orf47 Gene

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