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Aliases for C19orf47 Gene

Aliases for C19orf47 Gene

  • Chromosome 19 Open Reading Frame 47 2 3

External Ids for C19orf47 Gene

Previous GeneCards Identifiers for C19orf47 Gene

  • GC19M045517
  • GC19M040826
  • GC19M037262
  • GC19M040319

Summaries for C19orf47 Gene

GeneCards Summary for C19orf47 Gene

C19orf47 (Chromosome 19 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf47 Gene

Genomics for C19orf47 Gene

Regulatory Elements for C19orf47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C19orf47 Gene

Chromosome:
19
Start:
40,295,271 bp from pter
End:
40,348,527 bp from pter
Size:
53,257 bases
Orientation:
Minus strand

Genomic View for C19orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf47 Gene

Proteins for C19orf47 Gene

  • Protein details for C19orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9M1-CS047_HUMAN
    Recommended name:
    Uncharacterized protein C19orf47
    Protein Accession:
    Q8N9M1
    Secondary Accessions:
    • Q8IZ33
    • Q8N0V9

    Protein attributes for C19orf47 Gene

    Size:
    422 amino acids
    Molecular mass:
    44746 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C19orf47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C19orf47 Gene

Proteomics data for C19orf47 Gene at MOPED

Post-translational modifications for C19orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C19orf47 Gene

Domains & Families for C19orf47 Gene

Protein Domains for C19orf47 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C19orf47 Gene

Function for C19orf47 Gene

Gene Ontology (GO) - Molecular Function for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C19orf47: view

Phenotypes for C19orf47 Gene

GenomeRNAi human phenotypes for C19orf47:
genes like me logo Genes that share phenotypes with C19orf47: view

Animal Model Products

CRISPR Products

miRNA for C19orf47 Gene

miRTarBase miRNAs that target C19orf47

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for C19orf47 Gene

Localization for C19orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf47 Gene COMPARTMENTS Subcellular localization image for C19orf47 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with C19orf47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C19orf47 Gene

Pathways & Interactions for C19orf47 Gene

SuperPathways for C19orf47 Gene

No Data Available

Interacting Proteins for C19orf47 Gene

Gene Ontology (GO) - Biological Process for C19orf47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf47 Gene

Drugs & Compounds for C19orf47 Gene

No Compound Related Data Available

Transcripts for C19orf47 Gene

Unigene Clusters for C19orf47 Gene

Chromosome 19 open reading frame 47:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C19orf47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b
SP1: - - - -
SP2: - -
SP3: -
SP4: - -
SP5: -
SP6: -

Relevant External Links for C19orf47 Gene

GeneLoc Exon Structure for
C19orf47
ECgene alternative splicing isoforms for
C19orf47

Expression for C19orf47 Gene

mRNA expression in normal human tissues for C19orf47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C19orf47 Gene

This gene is overexpressed in Muscle - Skeletal (x8.8) and Heart - Left Ventricle (x5.1).

Protein differential expression in normal tissues from HIPED for C19orf47 Gene

This gene is overexpressed in Plasma (27.5), Testis (16.3), and Heart (9.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for C19orf47 Gene



SOURCE GeneReport for Unigene cluster for C19orf47 Gene Hs.631557

genes like me logo Genes that share expression patterns with C19orf47: view

Protein tissue co-expression partners for C19orf47 Gene

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for C19orf47 Gene

Orthologs for C19orf47 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf47 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C18H19orf47 35
  • 87.83 (n)
  • 92.58 (a)
C19orf47 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1H19orf47 35
  • 91.75 (n)
  • 94.95 (a)
C19orf47 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2310022A10Rik 35
  • 83.83 (n)
  • 85.5 (a)
2310022A10Rik 36
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf47 35
  • 99.53 (n)
  • 99.29 (a)
C19orf47 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307554 35
  • 84.58 (n)
  • 86.25 (a)
oppossum
(Monodelphis domestica)
Mammalia C19orf47 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia C19orf47 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c19orf47 35
  • 63.31 (n)
  • 68.63 (a)
Str.1068 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.6739 35
zebrafish
(Danio rerio)
Actinopterygii si:ch211-160d20.3 35
  • 61.38 (n)
  • 62.61 (a)
C18H19orf47 36
  • 50 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG16812 36
  • 22 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F53F8.5 36
  • 20 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6676 36
  • 25 (a)
OneToOne
Species with no ortholog for C19orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C19orf47 Gene

ENSEMBL:
Gene Tree for C19orf47 (if available)
TreeFam:
Gene Tree for C19orf47 (if available)

Paralogs for C19orf47 Gene

genes like me logo Genes that share paralogs with C19orf47: view

No data available for Paralogs for C19orf47 Gene

Variants for C19orf47 Gene

Sequence variations from dbSNP and Humsavar for C19orf47 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs890773 -- 40,320,217(-) AGGGC(C/T)GGGGT intron-variant
rs1962639 -- 40,341,204(-) GGCGC(A/G)TGCCA intron-variant
rs1991460 -- 40,327,162(-) GTGGC(A/G/T)CATGC intron-variant
rs2163840 -- 40,294,974(+) ACACC(A/T)TTTAC downstream-variant-500B
rs2368574 -- 40,307,292(+) GTTTC(A/G)CCATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf47 Gene

Variant ID Type Subtype PubMed ID
dgv1083e1 CNV Complex 17122850
nsv833831 CNV Loss 17160897
dgv3867n71 CNV Loss 21882294

Variation tolerance for C19orf47 Gene

Residual Variation Intolerance Score: 18.65% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.20; 39.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf47 Gene

HapMap Linkage Disequilibrium report
C19orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf47 Gene

Disorders for C19orf47 Gene

Relevant External Links for C19orf47

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf47
genes like me logo Genes that share disorders with C19orf47: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf47 Gene

Publications for C19orf47 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  4. Identifying biological pathways that underlie primordial short stature using network analysis. (PMID: 24711643) Hanson D. … Clayton P.E. (J. Mol. Endocrinol. 2014) 67
  5. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V. … Han D.K. (Sci. Signal. 2009) 67

Products for C19orf47 Gene

Sources for C19orf47 Gene

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