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Aliases for C19orf45 Gene

Aliases for C19orf45 Gene

  • Chromosome 19 Open Reading Frame 45 2 3

External Ids for C19orf45 Gene

Summaries for C19orf45 Gene

GeneCards Summary for C19orf45 Gene

C19orf45 (Chromosome 19 Open Reading Frame 45) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf45 Gene

Genomics for C19orf45 Gene

Genomic Location for C19orf45 Gene

Start:
7,492,976 bp from pter
End:
7,508,450 bp from pter
Size:
15,475 bases
Orientation:
Plus strand

Genomic View for C19orf45 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf45 Gene

Regulatory Elements for C19orf45 Gene

Proteins for C19orf45 Gene

  • Protein details for C19orf45 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NA69-CS045_HUMAN
    Recommended name:
    Uncharacterized protein C19orf45
    Protein Accession:
    Q8NA69
    Secondary Accessions:
    • Q8N115

    Protein attributes for C19orf45 Gene

    Size:
    505 amino acids
    Molecular mass:
    57331 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29824.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH34779.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C19orf45 Gene

Proteomics data for C19orf45 Gene at MOPED

Post-translational modifications for C19orf45 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C19orf45 Gene

No data available for DME Specific Peptides for C19orf45 Gene

Domains for C19orf45 Gene

Protein Domains for C19orf45 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C19orf45: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C19orf45 Gene

Function for C19orf45 Gene

Phenotypes for C19orf45 Gene

GenomeRNAi human phenotypes for C19orf45:
genes like me logo Genes that share phenotypes with C19orf45: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C19orf45 Gene

Localization for C19orf45 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf45 Gene COMPARTMENTS Subcellular localization image for C19orf45 gene
Compartment Confidence
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for C19orf45 Gene

Pathways for C19orf45 Gene

SuperPathways for C19orf45 Gene

No Data Available

Interacting Proteins for C19orf45 Gene

Gene Ontology (GO) - Biological Process for C19orf45 Gene

None

No data available for Pathways by source for C19orf45 Gene

Transcripts for C19orf45 Gene

Unigene Clusters for C19orf45 Gene

Chromosome 19 open reading frame 45:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf45 Gene

No ASD Table

Relevant External Links for C19orf45 Gene

GeneLoc Exon Structure for
C19orf45
ECgene alternative splicing isoforms for
C19orf45

Expression for C19orf45 Gene

mRNA expression in normal human tissues for C19orf45 Gene

mRNA differential expression in normal tissues according to GTEx for C19orf45 Gene

This gene is overexpressed in Testis (31.1).

SOURCE GeneReport for Unigene cluster for C19orf45 Gene Hs.631862

genes like me logo Genes that share expressions with C19orf45: view

Orthologs for C19orf45 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C19orf45 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf45 36
  • 99.21 (n)
  • 98.42 (a)
C19orf45 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C19orf45 37
  • 67 (a)
OneToOne
C7H19orf45 36
  • 79 (n)
  • 68.29 (a)
dog
(Canis familiaris)
Mammalia C19orf45 37
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700019B03Rik 36
  • 69.38 (n)
  • 60.16 (a)
1700019B03Rik 16
1700019B03Rik 37
  • 58 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C19orf45 37
  • 32 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf45 37
  • 28 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563425 36
  • 69.05 (n)
  • 59.92 (a)
chicken
(Gallus gallus)
Aves C19orf45 37
  • 30 (a)
OneToOne
C28H19orf45 36
  • 48.56 (n)
  • 32.54 (a)
Species with no ortholog for C19orf45:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf45 Gene

ENSEMBL:
Gene Tree for C19orf45 (if available)
TreeFam:
Gene Tree for C19orf45 (if available)

Paralogs for C19orf45 Gene

No data available for Paralogs for C19orf45 Gene

Variants for C19orf45 Gene

Sequence variations from dbSNP and Humsavar for C19orf45 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs475923 - 7,508,212(+) GCAAG(A/T)ACAGC missense, reference, nc-transcript-variant
rs484870 - 7,504,396(+) CCAGG(A/G)TCTGC reference, missense, nc-transcript-variant
rs505570 -- 7,507,283(+) AGCCT(C/G)AAGAT intron-variant
rs530223 -- 7,506,889(+) TCCCT(C/T)CTTCT intron-variant
rs568734 -- 7,504,989(-) aaaaa(A/C/G)gaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf45 Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV Gain 17911159
nsv910957 CNV Loss 21882294
nsv910958 CNV Loss 21882294
dgv3710n71 CNV Loss 21882294
nsv2400 CNV Insertion 18451855
nsv828416 CNV Loss 20364138
nsv910962 CNV Loss 21882294
nsv910963 CNV Loss 21882294
dgv3711n71 CNV Loss 21882294

Relevant External Links for C19orf45 Gene

HapMap Linkage Disequilibrium report
C19orf45

Disorders for C19orf45 Gene

No disorders were found for C19orf45 Gene.

No data available for UniProtKB/Swiss-Prot for C19orf45 Gene

Publications for C19orf45 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C19orf45 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C19orf45
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C19orf45
    • Block miRNA regulation of C19orf45 using miScript Target Protectors

    Sources for C19orf45 Gene

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