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Aliases for C19orf43 Gene

Aliases for C19orf43 Gene

  • Chromosome 19 Open Reading Frame 43 2 3
  • Functional Spliceosome-Associated Protein 18 2
  • Uncharacterized Protein C19orf43 3
  • My029 Protein 3
  • FSAP18 3

External Ids for C19orf43 Gene

Summaries for C19orf43 Gene

GeneCards Summary for C19orf43 Gene

C19orf43 (Chromosome 19 Open Reading Frame 43) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf43 Gene

Genomics for C19orf43 Gene

Genomic Location for C19orf43 Gene

Start:
12,730,640 bp from pter
End:
12,734,775 bp from pter
Size:
4,136 bases
Orientation:
Minus strand

Genomic View for C19orf43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf43 Gene

Regulatory Elements for C19orf43 Gene

Proteins for C19orf43 Gene

  • Protein details for C19orf43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQ61-CS043_HUMAN
    Recommended name:
    Uncharacterized protein C19orf43
    Protein Accession:
    Q9BQ61
    Secondary Accessions:

    Protein attributes for C19orf43 Gene

    Size:
    176 amino acids
    Molecular mass:
    18419 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf43 Gene

Proteomics data for C19orf43 Gene at MOPED

Post-translational modifications for C19orf43 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys146 and Lys152

Other Protein References for C19orf43 Gene

No data available for DME Specific Peptides for C19orf43 Gene

Domains for C19orf43 Gene

Protein Domains for C19orf43 Gene

ProtoNet:
genes like me logo Genes that share domains with C19orf43: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C19orf43 Gene

Function for C19orf43 Gene

Phenotypes for C19orf43 Gene

GenomeRNAi human phenotypes for C19orf43:
genes like me logo Genes that share phenotypes with C19orf43: view

miRNA for C19orf43 Gene

miRTarBase miRNAs that target C19orf43

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C19orf43 Gene

Localization for C19orf43 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf43 Gene COMPARTMENTS Subcellular localization image for C19orf43 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for C19orf43 Gene

Pathways for C19orf43 Gene

SuperPathways for C19orf43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C19orf43 Gene

None

No data available for Pathways by source for C19orf43 Gene

Transcripts for C19orf43 Gene

Unigene Clusters for C19orf43 Gene

Chromosome 19 open reading frame 43:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf43 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b
SP1: -
SP2:

Relevant External Links for C19orf43 Gene

GeneLoc Exon Structure for
C19orf43
ECgene alternative splicing isoforms for
C19orf43

Expression for C19orf43 Gene

mRNA expression in normal human tissues for C19orf43 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C19orf43 Gene

SOURCE GeneReport for Unigene cluster for C19orf43 Gene Hs.515155

genes like me logo Genes that share expressions with C19orf43: view

Orthologs for C19orf43 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf43 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf43 36
  • 100 (n)
  • 100 (a)
C19orf43 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf43 36
  • 93.56 (n)
  • 96.59 (a)
C7H19orf43 37
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C19orf43 37
  • 67 (a)
OneToOne
C20H19orf43 36
  • 93.18 (n)
  • 96.02 (a)
mouse
(Mus musculus)
Mammalia 2310036O22Rik 36
  • 92.05 (n)
  • 94.19 (a)
2310036O22Rik 16
2310036O22Rik 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 70 (a)
OneToMany
-- 37
  • 71 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1564093 36
  • 91.28 (n)
  • 93.6 (a)
lizard
(Anolis carolinensis)
Reptilia C19orf43 37
  • 65 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6514 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.528 36
zebrafish
(Danio rerio)
Actinopterygii C3H19orf43 37
  • 46 (a)
OneToOne
Dr.15916 36
LOC560758 36
  • 56.77 (n)
  • 52.73 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG18809 37
  • 18 (a)
OneToOne
Species with no ortholog for C19orf43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C19orf43 Gene

ENSEMBL:
Gene Tree for C19orf43 (if available)
TreeFam:
Gene Tree for C19orf43 (if available)

Paralogs for C19orf43 Gene

No data available for Paralogs for C19orf43 Gene

Variants for C19orf43 Gene

Sequence variations from dbSNP and Humsavar for C19orf43 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1052589 -- 12,730,671(-) CACTT(C/T)TGGGA utr-variant-3-prime
rs8100789 -- 12,733,207(+) cccAA(C/T)CCACG intron-variant
rs10420261 -- 12,731,584(+) GCACA(C/T)GCGAC intron-variant
rs10420318 -- 12,731,675(+) ACTTT(C/T)CACGC intron-variant
rs11542950 -- 12,733,173(-) CCAAC(A/T)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf43 Gene

Variant ID Type Subtype PubMed ID
dgv3733n71 CNV Loss 21882294
nsv911077 CNV Loss 21882294

Relevant External Links for C19orf43 Gene

HapMap Linkage Disequilibrium report
C19orf43

Disorders for C19orf43 Gene

No disorders were found for C19orf43 Gene.

No data available for UniProtKB/Swiss-Prot for C19orf43 Gene

Publications for C19orf43 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Composition and three-dimensional EM structure of double affinity- purified, human prespliceosomal A complexes. (PMID: 17332742) Behzadnia N. … Luehrmann R. (EMBO J. 2007) 3

Products for C19orf43 Gene

Sources for C19orf43 Gene

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