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Aliases for C19orf38 Gene

Aliases for C19orf38 Gene

  • Chromosome 19 Open Reading Frame 38 2 3 5
  • Highly Expressed In Immature Dendritic Cell Transcript 1 2 3
  • HIDE1 3 4
  • Protein HIDE1 3

External Ids for C19orf38 Gene

Previous GeneCards Identifiers for C19orf38 Gene

  • GC19P010821
  • GC19P010961
  • GC19P010537
  • GC19P010947

Summaries for C19orf38 Gene

GeneCards Summary for C19orf38 Gene

C19orf38 (Chromosome 19 Open Reading Frame 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf38 Gene

Genomics for C19orf38 Gene

Regulatory Elements for C19orf38 Gene

Enhancers for C19orf38 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F010423 1.3 FANTOM5 Ensembl ENCODE 17.4 -408.0 -407958 10.4 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A YBX1 ZNF2 YY1 ZNF143 ZNF561 EIF3G FBXL12 ZNF121 PDE4A C19orf38 RAVER1 ICAM1 TIMM29 LOC100419831
GH19F010875 1.4 FANTOM5 Ensembl ENCODE 12.7 +41.5 41498 4.9 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B DMAP1 YY1 SLC30A9 KANK2 DOCK6 LOC105372273 C19orf38 SMARCA4 S1PR2 CNN1 DNMT1 CARM1 PIR43209
GH19F010808 1.5 FANTOM5 Ensembl ENCODE 11.9 -22.1 -22087 11.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 EIF3G FBXL12 KANK2 DOCK6 LOC105372273 C19orf38 S1PR2 CNN1 TIMM29 ILF3-AS1
GH19F011086 0.6 FANTOM5 ENCODE 11.8 +255.8 255796 11.0 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF627 ZNF844 ZNF700 RAVER1 PRKCSH EIF3G ZNF878 ZNF491 SWSAP1 S1PR2
GH19F010421 1.4 FANTOM5 ENCODE 8.3 -414.5 -414506 0.5 SOX13 CTCF BCOR ZNF146 SUZ12 WRNIP1 ZNF76 CEBPG ZBTB48 RBAK C19orf38 ICAM1 PDE4A TYK2 CDC37 MIR1181 GC19P010476
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C19orf38 on UCSC Golden Path with GeneCards custom track

Promoters for C19orf38 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001417864 -575 1601 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for C19orf38 Gene

Chromosome:
19
Start:
10,836,575 bp from pter
End:
10,869,791 bp from pter
Size:
33,217 bases
Orientation:
Plus strand

Genomic View for C19orf38 Gene

Genes around C19orf38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf38 Gene

Proteins for C19orf38 Gene

  • Protein details for C19orf38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MVS5-HIDE1_HUMAN
    Recommended name:
    Protein HIDE1
    Protein Accession:
    A8MVS5
    Secondary Accessions:
    • B2RXI3

    Protein attributes for C19orf38 Gene

    Size:
    230 amino acids
    Molecular mass:
    24753 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf38 Gene

Post-translational modifications for C19orf38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C19orf38 Gene

No data available for DME Specific Peptides for C19orf38 Gene

Domains & Families for C19orf38 Gene

Protein Domains for C19orf38 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C19orf38 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C19orf38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C19orf38 Gene

Function for C19orf38 Gene

Phenotypes for C19orf38 Gene

genes like me logo Genes that share phenotypes with C19orf38: view

Animal Models for C19orf38 Gene

MGI Knock Outs for C19orf38:

Animal Model Products

  • Taconic Biosciences Mouse Models for C19orf38

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for C19orf38 Gene

Localization for C19orf38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C19orf38 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf38 Gene COMPARTMENTS Subcellular localization image for C19orf38 gene
Compartment Confidence
extracellular 3
plasma membrane 3
lysosome 1
mitochondrion 1
vacuole 1

Gene Ontology (GO) - Cellular Components for C19orf38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C19orf38: view

Pathways & Interactions for C19orf38 Gene

SuperPathways for C19orf38 Gene

No Data Available

Interacting Proteins for C19orf38 Gene

Gene Ontology (GO) - Biological Process for C19orf38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf38 Gene

Transcripts for C19orf38 Gene

mRNA/cDNA for C19orf38 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C19orf38 Gene

Chromosome 19 open reading frame 38:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf38 Gene

No ASD Table

Relevant External Links for C19orf38 Gene

GeneLoc Exon Structure for
C19orf38
ECgene alternative splicing isoforms for
C19orf38

Expression for C19orf38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C19orf38 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C19orf38 Gene

This gene is overexpressed in Whole Blood (x41.7).

Protein differential expression in normal tissues from HIPED for C19orf38 Gene

This gene is overexpressed in Monocytes (35.9), Testis (19.9), and Peripheral blood mononuclear cells (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C19orf38 Gene



Protein tissue co-expression partners for C19orf38 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C19orf38 Gene:

C19orf38

SOURCE GeneReport for Unigene cluster for C19orf38 Gene:

Hs.440535
genes like me logo Genes that share expression patterns with C19orf38: view

No data available for mRNA Expression by UniProt/SwissProt for C19orf38 Gene

Orthologs for C19orf38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C19orf38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19orf38 35
  • 97 (a)
OneToOne
C19H19orf38 34
  • 91.33 (n)
dog
(Canis familiaris)
Mammalia C20H19orf38 34
  • 80.79 (n)
C19orf38 35
  • 75 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H19orf38 34
  • 80.27 (n)
C19orf38 35
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AB124611 34 16 35
  • 78.13 (n)
rat
(Rattus norvegicus)
Mammalia LOC691141 34
  • 77.52 (n)
oppossum
(Monodelphis domestica)
Mammalia C19orf38 35
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf38 35
  • 44 (a)
OneToOne
Species where no ortholog for C19orf38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf38 Gene

ENSEMBL:
Gene Tree for C19orf38 (if available)
TreeFam:
Gene Tree for C19orf38 (if available)

Paralogs for C19orf38 Gene

No data available for Paralogs for C19orf38 Gene

Variants for C19orf38 Gene

Sequence variations from dbSNP and Humsavar for C19orf38 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10410700 -- 10,855,614(+) acctc(C/T)gcctc intron-variant
rs10421208 -- 10,853,947(+) TGTCA(A/G)Taggc intron-variant
rs11085749 -- 10,850,597(+) CTGCC(A/G)GGGGC intron-variant
rs111269794 -- 10,843,076(+) GATCC(G/T)GGGCT intron-variant
rs111344011 -- 10,849,925(+) CCAGG(C/T)ATAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf38 Gene

Variant ID Type Subtype PubMed ID
esv3583244 CNV loss 25503493
esv3643659 CNV loss 21293372
nsv1123220 CNV deletion 24896259
nsv1160584 CNV deletion 26073780
nsv2416 CNV insertion 18451855
nsv833748 CNV loss 17160897

Variation tolerance for C19orf38 Gene

Gene Damage Index Score: 4.05; 60.64% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C19orf38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C19orf38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C19orf38 Gene

Disorders for C19orf38 Gene

Relevant External Links for C19orf38

Genetic Association Database (GAD)
C19orf38
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C19orf38

No disorders were found for C19orf38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf38 Gene

Publications for C19orf38 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C19orf38 Gene

Sources for C19orf38 Gene

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