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Aliases for C19orf38 Gene

Aliases for C19orf38 Gene

  • Chromosome 19 Open Reading Frame 38 2 3
  • Highly Expressed In Immature Dendritic Cell Transcript 1 2 3
  • HIDE1 3 4
  • Protein HIDE1 3

External Ids for C19orf38 Gene

Summaries for C19orf38 Gene

GeneCards Summary for C19orf38 Gene

C19orf38 (Chromosome 19 Open Reading Frame 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf38 Gene

Genomics for C19orf38 Gene

Genomic Location for C19orf38 Gene

Start:
10,836,575 bp from pter
End:
10,869,790 bp from pter
Size:
33,216 bases
Orientation:
Plus strand

Genomic View for C19orf38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C19orf38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf38 Gene

Regulatory Elements for C19orf38 Gene

Proteins for C19orf38 Gene

  • Protein details for C19orf38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MVS5-HIDE1_HUMAN
    Recommended name:
    Protein HIDE1
    Protein Accession:
    A8MVS5
    Secondary Accessions:
    • B2RXI3

    Protein attributes for C19orf38 Gene

    Size:
    230 amino acids
    Molecular mass:
    24753 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C19orf38 Gene

Proteomics data for C19orf38 Gene at MOPED

Post-translational modifications for C19orf38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C19orf38 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C19orf38 Gene

Domains for C19orf38 Gene

Protein Domains for C19orf38 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C19orf38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C19orf38 Gene

Function for C19orf38 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C19orf38 Gene

Localization for C19orf38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C19orf38 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C19orf38 Gene COMPARTMENTS Subcellular localization image for C19orf38 gene
Compartment Confidence
extracellular 3
plasma membrane 3
cytosol 1
golgi apparatus 1
lysosome 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C19orf38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C19orf38: view

Pathways for C19orf38 Gene

SuperPathways for C19orf38 Gene

No Data Available

Interacting Proteins for C19orf38 Gene

Gene Ontology (GO) - Biological Process for C19orf38 Gene

None

No data available for Pathways by source for C19orf38 Gene

Transcripts for C19orf38 Gene

mRNA/cDNA for C19orf38 Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C19orf38 Gene

Chromosome 19 open reading frame 38:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf38 Gene

No ASD Table

Relevant External Links for C19orf38 Gene

GeneLoc Exon Structure for
C19orf38
ECgene alternative splicing isoforms for
C19orf38

Expression for C19orf38 Gene

mRNA expression in normal human tissues for C19orf38 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C19orf38 Gene

This gene is overexpressed in Whole Blood (41.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C19orf38 Gene

SOURCE GeneReport for Unigene cluster for C19orf38 Gene Hs.440535

genes like me logo Genes that share expressions with C19orf38: view

Orthologs for C19orf38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C19orf38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C19H19orf38 36
  • 91.33 (n)
  • 89.9 (a)
C19orf38 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C19orf38 37
  • 73 (a)
OneToOne
C7H19orf38 36
  • 80.27 (n)
  • 73.99 (a)
dog
(Canis familiaris)
Mammalia C19orf38 37
  • 75 (a)
OneToOne
C20H19orf38 36
  • 80.79 (n)
  • 75.11 (a)
mouse
(Mus musculus)
Mammalia AB124611 36
  • 78.13 (n)
  • 73.39 (a)
AB124611 16
AB124611 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C19orf38 37
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C19orf38 37
  • 44 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC691141 36
  • 77.52 (n)
  • 71.56 (a)
Species with no ortholog for C19orf38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C19orf38 Gene

ENSEMBL:
Gene Tree for C19orf38 (if available)
TreeFam:
Gene Tree for C19orf38 (if available)

Paralogs for C19orf38 Gene

No data available for Paralogs for C19orf38 Gene

Variants for C19orf38 Gene

Sequence variations from dbSNP and Humsavar for C19orf38 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1861633 -- 10,863,646(+) GCTGG(A/G)TGCGG intron-variant
rs4318317 -- 10,860,309(+) caggc(A/G)gatca intron-variant
rs4356588 -- 10,840,482(+) TTTGT(A/G)ATTAT intron-variant
rs4804535 -- 10,853,525(+) aggtg(A/T)tctgc intron-variant
rs7260254 -- 10,865,958(+) cagac(A/T)tccac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C19orf38 Gene

Variant ID Type Subtype PubMed ID
nsv833748 CNV Loss 17160897
nsv2416 CNV Insertion 18451855
nsv911050 CNV Loss 21882294

Relevant External Links for C19orf38 Gene

HapMap Linkage Disequilibrium report
C19orf38

Disorders for C19orf38 Gene

Relevant External Links for C19orf38

Genetic Association Database (GAD)
C19orf38
genes like me logo Genes that share disorders with C19orf38: view

No data available for UniProtKB/Swiss-Prot for C19orf38 Gene

Publications for C19orf38 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C19orf38 Gene

Sources for C19orf38 Gene

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